Print file information:
RUN_IN_PLACE=no
LINUXCNC_DIR=
LINUXCNC_BIN_DIR=/usr/bin
LINUXCNC_TCL_DIR=/usr/lib/tcltk/linuxcnc
LINUXCNC_SCRIPT_DIR=
LINUXCNC_RTLIB_DIR=/usr/realtime-2.6.32-122-rtai/modules/linuxcnc
LINUXCNC_CONFIG_DIR=
LINUXCNC_LANG_DIR=/usr/share/linuxcnc/tcl/msgs
INIVAR=inivar
HALCMD=halcmd
LINUXCNC_EMCSH=/usr/bin/wish8.5
LINUXCNC - 2.5.3
Machine configuration directory is '/home/johns/linuxcnc/configs/hm2-servo-1'
Machine configuration file is '5i25green.ini'
INIFILE=/home/johns/linuxcnc/configs/hm2-servo-1/5i25green.ini
PARAMETER_FILE=hm2-servo.var
TASK=milltask
HALUI=
DISPLAY=axis
Starting LinuxCNC...
Starting LinuxCNC server program: linuxcncsvr
Loading Real Time OS, RTAPI, and HAL_LIB modules
Starting LinuxCNC IO program: io
Shutting down and cleaning up LinuxCNC...
Killing task linuxcncsvr, PID=6209
Removing HAL_LIB, RTAPI, and Real Time OS modules
Removing NML shared memory segments
Cleanup done

Debug file information:
Can not find -sec MOT -var MOT -num 1 
Can not find -sec IO -var IO -num 1 
Can not find -sec LINUXCNC -var NML_FILE -num 1 
Can not find -sec EMC -var NML_FILE -num 1 
hm2-servogreen.hal:233: Pin 'hm2_5i25.0.gpio.25.in_not' does not exist
6209
  PID TTY      STAT   TIME COMMAND
Stopping realtime threads
Unloading hal components

Kernel message information:
[16643.887747] I-pipe: Domain RTAI registered.
[16643.887759] RTAI[hal]: <3.8.1> mounted over IPIPE-NOTHREADS 2.6-03.
[16643.887763] RTAI[hal]: compiled with gcc version 4.4.3 (Ubuntu 4.4.3-4ubuntu5) .
[16643.887849] RTAI[hal]: mounted (IPIPE-NOTHREADS, IMMEDIATE (INTERNAL IRQs DISPATCHED), ISOL_CPUS_MASK: 0).
[16643.887853] PIPELINE layers:
[16643.887857] f4440e20 9ac15d93 RTAI 200
[16643.887861] c085cb20 0 Linux 100
[16643.917694] RTAI[malloc]: global heap size = 2097152 bytes, <BSD>.
[16643.918480] RTAI[sched]: IMMEDIATE, MP, USER/KERNEL SPACE: <with RTAI OWN KTASKs>, kstacks pool size = 524288 bytes.
[16643.918491] RTAI[sched]: hard timer type/freq = APIC/12505048(Hz); default timing: periodic; linear timed lists.
[16643.918496] RTAI[sched]: Linux timer freq = 250 (Hz), TimeBase freq = 1650263000 hz.
[16643.918501] RTAI[sched]: timer setup = 999 ns, resched latency = 2943 ns.
[16643.918623] RTAI[usi]: enabled.
[16643.984509] RTAI[math]: loaded.
[16644.089013] hm2: loading Mesa HostMot2 driver version 0.15
[16644.094249] hm2_pci: loading Mesa AnyIO HostMot2 driver version 0.7
[16644.094309] hm2_pci 0000:06:00.0: PCI INT A -> GSI 18 (level, low) -> IRQ 18
[16644.094316] hm2_pci: discovered 5i25 at 0000:06:00.0
[16644.095074] hm2/hm2_5i25.0: Smart Serial Firmware Version 43
[16644.169434] hm2/hm2_5i25.0: 34 I/O Pins used:
[16644.169441] hm2/hm2_5i25.0:     IO Pin 000 (P3-01): IOPort
[16644.169445] hm2/hm2_5i25.0:     IO Pin 001 (P3-14): IOPort
[16644.169450] hm2/hm2_5i25.0:     IO Pin 002 (P3-02): IOPort
[16644.169455] hm2/hm2_5i25.0:     IO Pin 003 (P3-15): IOPort
[16644.169459] hm2/hm2_5i25.0:     IO Pin 004 (P3-03): IOPort
[16644.169463] hm2/hm2_5i25.0:     IO Pin 005 (P3-16): IOPort
[16644.169468] hm2/hm2_5i25.0:     IO Pin 006 (P3-04): IOPort
[16644.169472] hm2/hm2_5i25.0:     IO Pin 007 (P3-17): IOPort
[16644.169479] hm2/hm2_5i25.0:     IO Pin 008 (P3-05): Smart Serial Interface #0, pin RxData0 (Input)
[16644.169485] hm2/hm2_5i25.0:     IO Pin 009 (P3-06): Smart Serial Interface #0, pin TxData0 (Output)
[16644.169491] hm2/hm2_5i25.0:     IO Pin 010 (P3-07): Muxed Encoder Select #0, pin Mux Select 0 (Output)
[16644.169497] hm2/hm2_5i25.0:     IO Pin 011 (P3-08): Muxed Encoder #0, pin Muxed A (Input)
[16644.169502] hm2/hm2_5i25.0:     IO Pin 012 (P3-09): Muxed Encoder #0, pin Muxed B (Input)
[16644.169508] hm2/hm2_5i25.0:     IO Pin 013 (P3-10): Muxed Encoder #0, pin Muxed Index (Input)
[16644.169514] hm2/hm2_5i25.0:     IO Pin 014 (P3-11): Muxed Encoder #1, pin Muxed A (Input)
[16644.169519] hm2/hm2_5i25.0:     IO Pin 015 (P3-12): Muxed Encoder #1, pin Muxed B (Input)
[16644.169525] hm2/hm2_5i25.0:     IO Pin 016 (P3-13): Muxed Encoder #1, pin Muxed Index (Input)
[16644.169530] hm2/hm2_5i25.0:     IO Pin 017 (P2-01): IOPort
[16644.169534] hm2/hm2_5i25.0:     IO Pin 018 (P2-14): IOPort
[16644.169538] hm2/hm2_5i25.0:     IO Pin 019 (P2-02): IOPort
[16644.169543] hm2/hm2_5i25.0:     IO Pin 020 (P2-15): IOPort
[16644.169547] hm2/hm2_5i25.0:     IO Pin 021 (P2-03): IOPort
[16644.169551] hm2/hm2_5i25.0:     IO Pin 022 (P2-16): IOPort
[16644.169555] hm2/hm2_5i25.0:     IO Pin 023 (P2-04): IOPort
[16644.169560] hm2/hm2_5i25.0:     IO Pin 024 (P2-17): IOPort
[16644.169564] hm2/hm2_5i25.0:     IO Pin 025 (P2-05): IOPort
[16644.169568] hm2/hm2_5i25.0:     IO Pin 026 (P2-06): IOPort
[16644.169572] hm2/hm2_5i25.0:     IO Pin 027 (P2-07): IOPort
[16644.169576] hm2/hm2_5i25.0:     IO Pin 028 (P2-08): IOPort
[16644.169580] hm2/hm2_5i25.0:     IO Pin 029 (P2-09): IOPort
[16644.169585] hm2/hm2_5i25.0:     IO Pin 030 (P2-10): IOPort
[16644.169589] hm2/hm2_5i25.0:     IO Pin 031 (P2-11): IOPort
[16644.169593] hm2/hm2_5i25.0:     IO Pin 032 (P2-12): IOPort
[16644.169597] hm2/hm2_5i25.0:     IO Pin 033 (P2-13): IOPort
[16644.169673] hm2/hm2_5i25.0: registered
[16644.169677] hm2_5i25.0: initialized AnyIO board at 0000:06:00.0
[16644.603034] hm2_5i25.0: dropping AnyIO board at 0000:06:00.0
[16644.603048] hm2/hm2_5i25.0: unregistered
[16644.603091] hm2_pci 0000:06:00.0: PCI INT A disabled
[16644.603131] hm2_pci: driver unloaded
[16644.607439] hm2: unloading
[16644.665473] RTAI[math]: unloaded.
[16644.698635] SCHED releases registered named ALIEN RTGLBH
[16644.732594] RTAI[malloc]: unloaded.
[16644.828249] RTAI[sched]: unloaded (forced hard/soft/hard transitions: traps 0, syscalls 0).
[16644.832586] I-pipe: Domain RTAI unregistered.
[16644.832698] RTAI[hal]: unmounted.