Errors produced when I ran LinuxCNC with the simple 5i25-7i77-7i64 config I created in PNCconfig.

Print file information:
RUN_IN_PLACE=no
LINUXCNC_DIR=
LINUXCNC_BIN_DIR=/usr/bin
LINUXCNC_TCL_DIR=/usr/lib/tcltk/linuxcnc
LINUXCNC_SCRIPT_DIR=
LINUXCNC_RTLIB_DIR=/usr/realtime-2.6.32-122-rtai/modules/linuxcnc
LINUXCNC_CONFIG_DIR=
LINUXCNC_LANG_DIR=/usr/share/linuxcnc/tcl/msgs
INIVAR=inivar
HALCMD=halcmd
LINUXCNC_EMCSH=/usr/bin/wish8.5
LINUXCNC - 2.5.0
Machine configuration directory is '/home/cnc/linuxcnc/configs/TheBeast'
Machine configuration file is 'TheBeast.ini'
INIFILE=/home/cnc/linuxcnc/configs/TheBeast/TheBeast.ini
PARAMETER_FILE=linuxcnc.var
TASK=milltask
HALUI=halui
DISPLAY=axis
Starting LinuxCNC...
Starting LinuxCNC server program: linuxcncsvr
Loading Real Time OS, RTAPI, and HAL_LIB modules
Starting LinuxCNC IO program: io
Starting HAL User Interface program: halui
Shutting down and cleaning up LinuxCNC...
Running HAL shutdown script
Killing task linuxcncsvr, PID=5044
Removing HAL_LIB, RTAPI, and Real Time OS modules
Removing NML shared memory segments
Cleanup done

Debug file information:
Can not find -sec MOT -var MOT -num 1 
Can not find -sec IO -var IO -num 1 
Can not find -sec LINUXCNC -var NML_FILE -num 1 
Can not find -sec EMC -var NML_FILE -num 1 
TheBeast.hal:30: Pin 'hm2_5i25.0.7i64.0.2.digin.00.in-not' does not exist
5044
  PID TTY      STAT   TIME COMMAND
Stopping realtime threads
Unloading hal components

Kernel message information:
[429408.952325] I-pipe: Domain RTAI registered.
[429408.952336] RTAI[hal]: <3.8.1> mounted over IPIPE-NOTHREADS 2.6-03.
[429408.952339] RTAI[hal]: compiled with gcc version 4.4.3 (Ubuntu 4.4.3-4ubuntu5) .
[429408.952348] RTAI[hal]: mounted (IPIPE-NOTHREADS, IMMEDIATE (INTERNAL IRQs DISPATCHED), ISOL_CPUS_MASK: 0).
[429408.952352] PIPELINE layers:
[429408.952356] fb6e4e20 9ac15d93 RTAI 200
[429408.952360] c085cb20 0 Linux 100
[429408.986231] RTAI[malloc]: global heap size = 2097152 bytes, <BSD>.
[429408.986429] RTAI[sched]: IMMEDIATE, MP, USER/KERNEL SPACE: <with RTAI OWN KTASKs>, kstacks pool size = 524288 bytes.
[429408.986436] RTAI[sched]: hard timer type/freq = APIC/8312480(Hz); default timing: periodic; linear timed lists.
[429408.986441] RTAI[sched]: Linux timer freq = 250 (Hz), TimeBase freq = 2394103000 hz.
[429408.986445] RTAI[sched]: timer setup = 999 ns, resched latency = 2943 ns.
[429408.986593] RTAI[usi]: enabled.
[429409.112380] RTAI[math]: loaded.
[429409.229390] hm2: loading Mesa HostMot2 driver version 0.15
[429409.234915] hm2_pci: loading Mesa AnyIO HostMot2 driver version 0.7
[429409.234973] hm2_pci 0000:02:00.0: PCI INT A -> GSI 21 (level, low) -> IRQ 21
[429409.234979] hm2_pci: discovered 5i25 at 0000:02:00.0
[429409.236944] hm2/hm2_5i25.0: Smart Serial Firmware Version 33
[429409.353960] hm2/hm2_5i25.0: 34 I/O Pins used:
[429409.353970] hm2/hm2_5i25.0:     IO Pin 000 (P3-01): IOPort
[429409.353976] hm2/hm2_5i25.0:     IO Pin 001 (P3-14): IOPort
[429409.353979] hm2/hm2_5i25.0:     IO Pin 002 (P3-02): IOPort
[429409.353985] hm2/hm2_5i25.0:     IO Pin 003 (P3-15): Smart Serial Interface #0, pin TxData1 (Output)
[429409.353989] hm2/hm2_5i25.0:     IO Pin 004 (P3-03): Smart Serial Interface #0, pin RxData1 (Input)
[429409.353994] hm2/hm2_5i25.0:     IO Pin 005 (P3-16): IOPort
[429409.353997] hm2/hm2_5i25.0:     IO Pin 006 (P3-04): IOPort
[429409.354002] hm2/hm2_5i25.0:     IO Pin 007 (P3-17): Muxed Encoder Select #0, pin Mux Select 0 (Output)
[429409.354006] hm2/hm2_5i25.0:     IO Pin 008 (P3-05): Muxed Encoder #0, pin Muxed A (Input)
[429409.354011] hm2/hm2_5i25.0:     IO Pin 009 (P3-06): Muxed Encoder #0, pin Muxed B (Input)
[429409.354016] hm2/hm2_5i25.0:     IO Pin 010 (P3-07): Muxed Encoder #0, pin Muxed Index (Input)
[429409.354020] hm2/hm2_5i25.0:     IO Pin 011 (P3-08): Muxed Encoder #1, pin Muxed A (Input)
[429409.354025] hm2/hm2_5i25.0:     IO Pin 012 (P3-09): Muxed Encoder #1, pin Muxed B (Input)
[429409.354030] hm2/hm2_5i25.0:     IO Pin 013 (P3-10): Muxed Encoder #1, pin Muxed Index (Input)
[429409.354034] hm2/hm2_5i25.0:     IO Pin 014 (P3-11): Muxed Encoder #2, pin Muxed A (Input)
[429409.354039] hm2/hm2_5i25.0:     IO Pin 015 (P3-12): Muxed Encoder #2, pin Muxed B (Input)
[429409.354044] hm2/hm2_5i25.0:     IO Pin 016 (P3-13): Muxed Encoder #2, pin Muxed Index (Input)
[429409.354048] hm2/hm2_5i25.0:     IO Pin 017 (P2-01): IOPort
[429409.354051] hm2/hm2_5i25.0:     IO Pin 018 (P2-14): IOPort
[429409.354055] hm2/hm2_5i25.0:     IO Pin 019 (P2-02): IOPort
[429409.354059] hm2/hm2_5i25.0:     IO Pin 020 (P2-15): IOPort
[429409.354062] hm2/hm2_5i25.0:     IO Pin 021 (P2-03): IOPort
[429409.354066] hm2/hm2_5i25.0:     IO Pin 022 (P2-16): IOPort
[429409.354069] hm2/hm2_5i25.0:     IO Pin 023 (P2-04): IOPort
[429409.354073] hm2/hm2_5i25.0:     IO Pin 024 (P2-17): IOPort
[429409.354077] hm2/hm2_5i25.0:     IO Pin 025 (P2-05): IOPort
[429409.354080] hm2/hm2_5i25.0:     IO Pin 026 (P2-06): IOPort
[429409.354084] hm2/hm2_5i25.0:     IO Pin 027 (P2-07): IOPort
[429409.354087] hm2/hm2_5i25.0:     IO Pin 028 (P2-08): IOPort
[429409.354091] hm2/hm2_5i25.0:     IO Pin 029 (P2-09): IOPort
[429409.354095] hm2/hm2_5i25.0:     IO Pin 030 (P2-10): IOPort
[429409.354099] hm2/hm2_5i25.0:     IO Pin 031 (P2-11): IOPort
[429409.354103] hm2/hm2_5i25.0:     IO Pin 032 (P2-12): IOPort
[429409.354106] hm2/hm2_5i25.0:     IO Pin 033 (P2-13): IOPort
[429409.354221] hm2/hm2_5i25.0: registered
[429409.354225] hm2_5i25.0: initialized AnyIO board at 0000:02:00.0
[429409.785824] hm2_5i25.0: dropping AnyIO board at 0000:02:00.0
[429409.785836] hm2/hm2_5i25.0: unregistered
[429409.785889] hm2_pci 0000:02:00.0: PCI INT A disabled
[429409.787266] hm2_pci: driver unloaded
[429409.792106] hm2: unloading
[429409.861879] RTAI[math]: unloaded.
[429409.951275] SCHED releases registered named ALIEN RTGLBH
[429409.965889] RTAI[malloc]: unloaded.
[429410.064020] RTAI[sched]: unloaded (forced hard/soft/hard transitions: traps 0, syscalls 0).
[429410.069188] I-pipe: Domain RTAI unregistered.
[429410.069202] RTAI[hal]: unmounted.