Homing is not working

HAl and ini files attached.  We are retrofitting linux cnc to work with a Bostomatic 3 axis milling machine using a mesaboard.  We have accomplished a lot however we cannot seem to figure out why our machine does not follow the homing procedure.  Jogging works, we have remapped M6 successfully... we even made a bust using the machine.  However when the home all button is pressed (using AXIS as gui), the only movement that occurs is the home offset or home (parameter) however many units they are set. We used halshow to reveal the signals as a way to hopefully diagnose the problem, but we have found is that some signals are not present and they should be.  For example the pins with the verb homing do not get signalled, but those that end in homed are set after the home-all button is pressed. 
I have read the Homing Configuration in the docs many times through and we have essentially exhausted every combination of home_search_velocity, home_latch_velocity...etc.  The configuration we want to use is one where latch_velocity has an opposite sign than home_search does and we are using the index, and our soft limits are being shared as the home switch. (home_ignore_limits = YES) .  I've been thinking the only solution is to write a custom homing module using homecomp  or an existing one perhaps cia-402.   A response either suggesting other fixes or how to use homecomp would be extremely helpful.  Thank you 

Did you create the config with PNCConf?

Sometimes, when weird stuff happens, the best thing to do is create a new, fresh config with PNCConf (or StepConf).

Try it!

(If that's possible for your scenario)

Can you do a:

halcmd show all | grep home > beforehome.txt

With LinuxCNC launched and enabled but before being homed

and

halcmd show all | grep home > afterhome.txt

With LinuxCNC launched and enabled after being homed (well at least home button pressed)

and post both berforehome.txt and afterhome.txt here?

I will try both,  thank you! Ill post about the results and those files. 

Thank you for the helpful hal commands.  Here are the contents of the before and after home text files.

The behaviour does not change if I change the home_sequence values to: 0, 1, 2

Does individual joint homing work?

(comment out the HOME_SEQUENCE settings in the .ini file)
 

Individual homing does not work.