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Ok, and the quill is motorized it looks like? We can figure out the ratio stuff later. lets start by ensuring you get the proper rpm from remora. I think the board is doing a 0-10v analog correct? You should be able to measure the voltage output from the board and verify its outputting correctly.

If I have this correct, when you S5000 M3, it should read 10v.

edit, to do threading, you will need an encoder.