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Yes, iov2 has been removed in master.
Simple cases (like yours seems to be) can be handled by a ngc remap for M6 while more complex situations can be handled by a python remap of M6 and or T.

If you just need a safety interlock you might be able to simply add some hal logic that inhibits the relevant output pins until certain conditions are met.

That error report still refers to the 'pid.s.do-pid-calcs' not being found. Maybe you attached the wrong file?

Yes, exactly. But do you know of any example configs or even discussions on how to implement a homing origin switch? I don't think I have found any.