Tool change .ngc brakes the ability to use "run from here"

That explains why my lathes don't have that problem. My mill has remapped M6. The lathes not...

I made a lathe retrofit weeks ago and worked almost fine, only problem was that I had to add an M01 before each tool change because when running the program with 4 tool changes the program skip the moving blocks and makes the next tool change(very crazy) but with an M01 before each change that worked around ja ja.

Found a small workaround which is not really safe but is it the best until now: if I put a block skip symbol( / )in front of each tool change line up to the ones I don't want to use and activating the block skip function I can run from a specific line normally.
I will keep searching mean while.