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The FPGA slave output looks bizarre (like a clock)
One way I can see this happening (assuming the pins are correct)
is that you have double clocking from SI issues.
Do you have enough grounds between the cards?
Ground bumping is a huge issue here, for example, the 7C81 uses all 8 RPI grounds
and AC bypasses all unused power pins giving a total of 12 HF ground returns to
avoid this issue.
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Did you fix the grounding?.
I would expect that kind of behaviour with only one ground wire.
SI issues like this will not be solved by lower clock speeds
if you do not get one bit shifted out for each clock, you have a SI issue...
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