3040Z-DQ Y axis working in stepconfig, not in program

Hi,
i cant figure out the right config of the Y axis. The forums suggest enable pin inversion, but there is no enable pin in my config. I attempted to import Mach3, which did nothing and it put me back to the first page of Stepconf. So, no way out there. I ended up copying the Mach config by hand from Mach3 config tab to Stepconf. Stepconf test works, program does not. Inverting Y step or dir, or both has no effect in program.

Configuration:
1 - spindle CW (DIR in Mach3, does not matter - its actualy enable)
2 - X step
3 - X dir (inverted)
4 - Y step
5 - Y dir
6 - Z step
7 - Z dir
8 - unused
9 - unused
10 - home Z
11 - home X
12 - home Y
13 - ESTOP inv.
14 - unused
15 - PROBE inv.
16 - unused
17 - SPINDLE PWM

When i try to jog, X and Z are moving just fine, but Y just steps one at the time. Yes, i found this issue in the stepper diagnostics, subsection 1.1.1 , which i gave a try and the axis ended not moving at all.

Can someone tell me what the hell is happening here and hot to fix that, because i want to give linuxcnc a try.

Thank you for your reply and sorry for the reply delay, i had night shifts... Anyway:

I did not try program (GCODE) as i want to setup the router first (endstops, homing, probe...) and jogging Y axis didnt work.
Note that i didnt got to calibrate axis, so the steps might be off, since i did not get pass to get all axis working.

Thank you for your help.



 

That was it, i changed the min/max in the .ini and it works. The question why Stepconf edited all axis but Y remains.

Anyway: Thank you very very much.

I have another question: Is there some magic involved in endstops? They work in Mach, but i cant get them to work in linuxcnc.

They are located at X min, Y max, Z max. I cant get them to trigger. Is there some hidden diagnostics screen like in Mach3?