Issues Homing 6 DOF Robot arm

Hey guys, ive just finished working on a homing sequence for my 6 dof robot arm using a puma560 config and its homing perfectly fine except for when the homing sequence is supposed to end, after all joints find their end sensors and drive to the home position, the joints pos is set correctly (in my case 0, 90, 0, 0, 0, 0), the simulator position matches the physical position but as soon as the sequence ends the genserkins position goes to these crazy values and i get a kinematics failure and cant move anything, below ive attached the ini and hal files aswell as a screenshot.

i need to set some axis to non Zero values to prevent the kinematics failure,
try to set the 4. and 5. joint to 0.01 and check if the error is gone