Has anyone modified the setup a little bit to be compatible with the original EMCO automatic tool changer?
^ I am going to be in your boat in a few weeks to a few months, this thread was a good read. We can figure it out together when I get there if we don't get advice on this!
So, could you post some code, or screen shots?
Encoder index-enable is your input from the CNC machine? If so check for a chip stuck by the sensor. Had that happen
If it's something from the HAL file or linuxcnc, no ideas (yet).