W axis with gantry kins hal/ini configuration

It may be worth while giving it a try with the Joints_Axis9 branch. I think I was able to make it work there, with a quick test in a VM. I'm not sure when or if JA is scheduled to be incorporated into master, but there has been talk of it for some time.
With JA you don't have to have W assigned to joint 8, and therefore don't have the need of any empty joint or axis place holders.

If I put [TRAJ] AXES=5 as the sample config suggests it should be I get this:

[code]Print file information:
RUN_IN_PLACE=no
LINUXCNC_DIR=
LINUXCNC_BIN_DIR=/usr/bin
LINUXCNC_TCL_DIR=/usr/lib/tcltk/linuxcnc
LINUXCNC_SCRIPT_DIR=
LINUXCNC_RTLIB_DIR=/usr/realtime-3.4-9-rtai-686-pae/modules/linuxcnc
LINUXCNC_CONFIG_DIR=
LINUXCNC_LANG_DIR=/usr/share/linuxcnc/tcl/msgs
INIVAR=inivar
HALCMD=halcmd
LINUXCNC_EMCSH=/usr/bin/wish8.5
LINUXCNC - 2.7.3
Machine configuration directory is '/home/guy/linuxcnc/configs/LinuxCNC'
Machine configuration file is 'LinuxCNCgkins.ini'
INIFILE=/home/guy/linuxcnc/configs/LinuxCNC/LinuxCNCgkins.ini
PARAMETER_FILE=linuxcnc.var
TASK=milltask
HALUI=halui
DISPLAY=axis
Starting LinuxCNC...
Starting LinuxCNC server program: linuxcncsvr
Loading Real Time OS, RTAPI, and HAL_LIB modules
Starting LinuxCNC IO program: io
Starting HAL User Interface program: halui
Found file(REL): ./LinuxCNCgkins.hal
INFO CLASSICLADDER- No ladder GUI requested-Realtime runs till HAL closes.
Starting TASK program: milltask
Starting DISPLAY program: axis
emcTrajSetAxes failing: axes=5 axismask=107
emcTrajSetAxes failing: axes=5 axismask=107
emcMotionInit: ini_hal_init fail
emcTrajSetAxes failing: axes=5 axismask=107
emcMotionInit: ini_hal_init fail
emcTrajSetAxes failing: axes=5 axismask=107
emcMotionInit: ini_hal_init fail
emcTrajSetAxes failing: axes=5 axismask=107
emcMotionInit: ini_hal_init fail
emcTrajSetAxes failing: axes=5 axismask=107
emcMotionInit: ini_hal_init fail
waiting for s.axes
waiting for s.axes
waiting for s.axes
waiting for s.axes
waiting for s.axes
waiting for s.axes
waiting for s.axes
waiting for s.axes
waiting for s.axes
emcTrajSetAxes failing: axes=5 axismask=107
emcMotionInit: ini_hal_init fail
Shutting down and cleaning up LinuxCNC...
Killing task linuxcncsvr, PID=7564
Killing task milltask, PID=7607
Removing HAL_LIB, RTAPI, and Real Time OS modules
Removing NML shared memory segments

Debug file information:
.
HAL: ERROR: duplicate component name 'inihal'
ini_hal_init: ERROR: hal_init() failed
HAL: ERROR: duplicate component name 'inihal'
ini_hal_init: ERROR: hal_init() failed
HAL: ERROR: duplicate component name 'inihal'
ini_hal_init: ERROR: hal_init() failed
HAL: ERROR: duplicate component name 'inihal'
ini_hal_init: ERROR: hal_init() failed
HAL: ERROR: duplicate component name 'inihal'
ini_hal_init: ERROR: hal_init() failed
A configuration error is preventing LinuxCNC from starting.
More information may be available when running from a terminal.
HAL: ERROR: duplicate component name 'inihal'
ini_hal_init: ERROR: hal_init() failed
7564
PID TTY STAT TIME COMMAND
7607
PID TTY STAT TIME COMMAND
Stopping realtime threads
Unloading hal components

Kernel message information:
io 0x0290-0x029f] has been reserved
[ 0.154577] system 00:0d: Plug and Play ACPI device, IDs PNP0c02 (active)
[ 0.154685] pnp 00:0e: [mem 0xf8000000-0xfbffffff]
[ 0.154783] system 00:0e: [mem 0xf8000000-0xfbffffff] has been reserved
[ 0.154793] system 00:0e: Plug and Play ACPI device, IDs PNP0c02 (active)
[ 0.155291] pnp 00:0f: [mem 0x00000000-0x0009ffff]
[ 0.155299] pnp 00:0f: [mem 0x000c0000-0x000cffff]
[ 0.155305] pnp 00:0f: [mem 0x000e0000-0x000fffff]
[ 0.155312] pnp 00:0f: [mem 0x00100000-0x7f6fffff]
[ 0.155318] pnp 00:0f: [mem 0xfed90000-0xffffffff]
[ 0.155435] system 00:0f: [mem 0x00000000-0x0009ffff] could not be reserved
[ 0.155444] system 00:0f: [mem 0x000c0000-0x000cffff] could not be reserved
[ 0.155453] system 00:0f: [mem 0x000e0000-0x000fffff] could not be reserved
[ 0.155461] system 00:0f: [mem 0x00100000-0x7f6fffff] could not be reserved
[ 0.155470] system 00:0f: [mem 0xfed90000-0xffffffff] could not be reserved
[ 0.155479] system 00:0f: Plug and Play ACPI device, IDs PNP0c01 (active)
[ 0.155885] pnp: PnP ACPI: found 16 devices
[ 0.155891] ACPI: ACPI bus type pnp unregistered
[ 0.155899] PnPBIOS: Disabled by ACPI PNP
[ 0.196275] Switching to clocksource acpi_pm
[ 0.196358] pci 0000:00:1f.2: BAR 5: assigned [mem 0x80000000-0x800003ff]
[ 0.196371] pci 0000:00:1e.0: PCI bridge to [bus 01-01]
[ 0.196381] pci 0000:00:1e.0: bridge window [mem 0xfeb00000-0xfebfffff]
[ 0.196408] pci 0000:00:1e.0: setting latency timer to 64
[ 0.196417] pci_bus 0000:00: resource 4 [io 0x0000-0x0cf7]
[ 0.196424] pci_bus 0000:00: resource 5 [io 0x0d00-0xffff]
[ 0.196430] pci_bus 0000:00: resource 6 [mem 0x000a0000-0x000bffff]
[ 0.196437] pci_bus 0000:00: resource 7 [mem 0x000d0000-0x000dffff]
[ 0.196444] pci_bus 0000:00: resource 8 [mem 0x7f700000-0xf7ffffff]
[ 0.196451] pci_bus 0000:00: resource 9 [mem 0xfc000000-0xfed8ffff]
[ 0.196458] pci_bus 0000:01: resource 1 [mem 0xfeb00000-0xfebfffff]
[ 0.196465] pci_bus 0000:01: resource 4 [io 0x0000-0x0cf7]
[ 0.196472] pci_bus 0000:01: resource 5 [io 0x0d00-0xffff]
[ 0.196478] pci_bus 0000:01: resource 6 [mem 0x000a0000-0x000bffff]
[ 0.196485] pci_bus 0000:01: resource 7 [mem 0x000d0000-0x000dffff]
[ 0.196492] pci_bus 0000:01: resource 8 [mem 0x7f700000-0xf7ffffff]
[ 0.196499] pci_bus 0000:01: resource 9 [mem 0xfc000000-0xfed8ffff]
[ 0.196680] NET: Registered protocol family 2
[ 0.196830] IP route cache hash table entries: 32768 (order: 5, 131072 bytes)
[ 0.197232] TCP established hash table entries: 131072 (order: 8, 1048576 bytes)
[ 0.198095] TCP bind hash table entries: 65536 (order: 7, 524288 bytes)
[ 0.198495] TCP: Hash tables configured (established 131072 bind 65536)
[ 0.198502] TCP: reno registered
[ 0.198512] UDP hash table entries: 512 (order: 2, 16384 bytes)
[ 0.198530] UDP-Lite hash table entries: 512 (order: 2, 16384 bytes)
[ 0.198777] NET: Registered protocol family 1
[ 0.198815] pci 0000:00:02.0: Boot video device
[ 0.199054] PCI: CLS 0 bytes, default 64
[ 0.199178] Unpacking initramfs...
[ 0.791941] Freeing initrd memory: 14252k freed
[ 0.803154] audit: initializing netlink socket (disabled)
[ 0.803189] type=2000 audit(1449573301.800:1): initialized
[ 0.826516] highmem bounce pool size: 64 pages
[ 0.826531] HugeTLB registered 4 MB page size, pre-allocated 0 pages
[ 0.826987] VFS: Disk quotas dquot_6.5.2
[ 0.827052] Dquot-cache hash table entries: 1024 (order 0, 4096 bytes)
[ 0.827225] msgmni has been set to 1721
[ 0.827591] alg: No test for stdrng (krng)
[ 0.827664] Block layer SCSI generic (bsg) driver version 0.4 loaded (major 253)
[ 0.827674] io scheduler noop registered
[ 0.827679] io scheduler deadline registered
[ 0.827732] io scheduler cfq registered (default)
[ 0.827909] pci_hotplug: PCI Hot Plug PCI Core version: 0.5
[ 0.827952] pciehp: PCI Express Hot Plug Controller Driver version: 0.4
[ 0.827958] acpiphp: ACPI Hot Plug PCI Controller Driver version: 0.5
[ 0.828779] GHES: HEST is not enabled!
[ 0.828809] isapnp: Scanning for PnP cards...
[ 1.182753] isapnp: No Plug & Play device found
[ 1.182857] Serial: 8250/16550 driver, 4 ports, IRQ sharing enabled
[ 1.203243] serial8250: ttyS0 at I/O 0x3f8 (irq = 4) is a 16550A
[ 1.224210] 00:0c: ttyS0 at I/O 0x3f8 (irq = 4) is a 16550A
[ 1.224537] Linux agpgart interface v0.103
[ 1.224746] agpgart-intel 0000:00:00.0: Intel GMA3150 Chipset
[ 1.224917] agpgart-intel 0000:00:00.0: detected gtt size: 524288K total, 262144K mappable
[ 1.225134] agpgart-intel 0000:00:00.0: detected 8192K stolen memory
[ 1.225330] agpgart-intel 0000:00:00.0: AGP aperture is 256M @ 0xe0000000
[ 1.225623] i8042: PNP: PS/2 Controller [PNP0303:PS2K] at 0x60,0x64 irq 1
[ 1.225629] i8042: PNP: PS/2 appears to have AUX port disabled, if this is incorrect please boot with i8042.nopnp
[ 1.226383] serio: i8042 KBD port at 0x60,0x64 irq 1
[ 1.226611] mousedev: PS/2 mouse device common for all mice
[ 1.226708] rtc_cmos 00:03: RTC can wake from S4
[ 1.226904] rtc_cmos 00:03: rtc core: registered rtc_cmos as rtc0
[ 1.226939] rtc0: alarms up to one month, y3k, 114 bytes nvram
[ 1.227191] TCP: cubic registered
[ 1.227348] NET: Registered protocol family 10
[ 1.227825] Mobile IPv6
[ 1.227833] NET: Registered protocol family 17
[ 1.227846] Registering the dns_resolver key type
[ 1.227957] Using IPI No-Shortcut mode
[ 1.228226] PM: Hibernation image not present or could not be loaded.
[ 1.228255] registered taskstats version 1
[ 1.228743] rtc_cmos 00:03: setting system clock to 2015-12-08 11:15:02 UTC (1449573302)
[ 1.228944] Freeing unused kernel memory: 416k freed
[ 1.229311] Write protecting the kernel text: 3496k
[ 1.229367] Write protecting the kernel read-only data: 984k
[ 1.254214] input: AT Translated Set 2 keyboard as /devices/platform/i8042/serio0/input/input0
[ 1.264376] udevd[49]: starting version 175
[ 1.394186] usbcore: registered new interface driver usbfs
[ 1.394239] usbcore: registered new interface driver hub
[ 1.419006] usbcore: registered new device driver usb
[ 1.419943] ehci_hcd: USB 2.0 'Enhanced' Host Controller (EHCI) Driver
[ 1.420118] ehci_hcd 0000:00:1d.7: setting latency timer to 64
[ 1.420127] ehci_hcd 0000:00:1d.7: EHCI Host Controller
[ 1.420185] ehci_hcd 0000:00:1d.7: new USB bus registered, assigned bus number 1
[ 1.420221] ehci_hcd 0000:00:1d.7: using broken periodic workaround
[ 1.420238] ehci_hcd 0000:00:1d.7: debug port 1
[ 1.448859] uhci_hcd: USB Universal Host Controller Interface driver
[ 1.484221] ehci_hcd 0000:00:1d.7: cache line size of 64 is not supported
[ 1.484270] ehci_hcd 0000:00:1d.7: irq 23, io mem 0xfea77c00
[ 1.496742] ehci_hcd 0000:00:1d.7: USB 2.0 started, EHCI 1.00
[ 1.496804] usb usb1: New USB device found, idVendor=1d6b, idProduct=0002
[ 1.496812] usb usb1: New USB device strings: Mfr=3, Product=2, SerialNumber=1
[ 1.496819] usb usb1: Product: EHCI Host Controller
[ 1.496825] usb usb1: Manufacturer: Linux 3.4-9-rtai-686-pae ehci_hcd
[ 1.496831] usb usb1: SerialNumber: 0000:00:1d.7
[ 1.497133] hub 1-0:1.0: USB hub found
[ 1.497147] hub 1-0:1.0: 8 ports detected
[ 1.497389] uhci_hcd 0000:00:1d.0: setting latency timer to 64
[ 1.497398] uhci_hcd 0000:00:1d.0: UHCI Host Controller
[ 1.497423] uhci_hcd 0000:00:1d.0: new USB bus registered, assigned bus number 2
[ 1.497466] uhci_hcd 0000:00:1d.0: irq 23, io base 0x0000e880
[ 1.497550] usb usb2: New USB device found, idVendor=1d6b, idProduct=0001
[ 1.497557] usb usb2: New USB device strings: Mfr=3, Product=2, SerialNumber=1
[ 1.497563] usb usb2: Product: UHCI Host Controller
[ 1.497569] usb usb2: Manufacturer: Linux 3.4-9-rtai-686-pae uhci_hcd
[ 1.497575] usb usb2: SerialNumber: 0000:00:1d.0
[ 1.497831] hub 2-0:1.0: USB hub found
[ 1.497845] hub 2-0:1.0: 2 ports detected
[ 1.498051] uhci_hcd 0000:00:1d.1: setting latency timer to 64
[ 1.498059] uhci_hcd 0000:00:1d.1: UHCI Host Controller
[ 1.498079] uhci_hcd 0000:00:1d.1: new USB bus registered, assigned bus number 3
[ 1.498141] uhci_hcd 0000:00:1d.1: irq 19, io base 0x0000e800
[ 1.498222] usb usb3: New USB device found, idVendor=1d6b, idProduct=0001
[ 1.498230] usb usb3: New USB device strings: Mfr=3, Product=2, SerialNumber=1
[ 1.498236] usb usb3: Product: UHCI Host Controller
[ 1.498242] usb usb3: Manufacturer: Linux 3.4-9-rtai-686-pae uhci_hcd
[ 1.498248] usb usb3: SerialNumber: 0000:00:1d.1
[ 1.498489] hub 3-0:1.0: USB hub found
[ 1.498503] hub 3-0:1.0: 2 ports detected
[ 1.498694] uhci_hcd 0000:00:1d.2: setting latency timer to 64
[ 1.498702] uhci_hcd 0000:00:1d.2: UHCI Host Controller
[ 1.498727] uhci_hcd 0000:00:1d.2: new USB bus registered, assigned bus number 4
[ 1.498786] uhci_hcd 0000:00:1d.2: irq 18, io base 0x0000e480
[ 1.498867] usb usb4: New USB device found, idVendor=1d6b, idProduct=0001
[ 1.498875] usb usb4: New USB device strings: Mfr=3, Product=2, SerialNumber=1
[ 1.498881] usb usb4: Product: UHCI Host Controller
[ 1.498887] usb usb4: Manufacturer: Linux 3.4-9-rtai-686-pae uhci_hcd
[ 1.498893] usb usb4: SerialNumber: 0000:00:1d.2
[ 1.499143] hub 4-0:1.0: USB hub found
[ 1.499156] hub 4-0:1.0: 2 ports detected
[ 1.499340] uhci_hcd 0000:00:1d.3: setting latency timer to 64
[ 1.499348] uhci_hcd 0000:00:1d.3: UHCI Host Controller
[ 1.499368] uhci_hcd 0000:00:1d.3: new USB bus registered, assigned bus number 5
[ 1.499424] uhci_hcd 0000:00:1d.3: irq 16, io base 0x0000e400
[ 1.499514] usb usb5: New USB device found, idVendor=1d6b, idProduct=0001
[ 1.499522] usb usb5: New USB device strings: Mfr=3, Product=2, SerialNumber=1
[ 1.499528] usb usb5: Product: UHCI Host Controller
[ 1.499534] usb usb5: Manufacturer: Linux 3.4-9-rtai-686-pae uhci_hcd
[ 1.499540] usb usb5: SerialNumber: 0000:00:1d.3
[ 1.499798] hub 5-0:1.0: USB hub found
[ 1.499811] hub 5-0:1.0: 2 ports detected
[ 1.511837] SCSI subsystem initialized
[ 1.531844] microcode: CPU0 sig=0x106ca, pf=0x8, revision=0x107
[ 1.536347] libata version 3.00 loaded.
[ 1.537111] ata_piix 0000:00:1f.2: version 2.13
[ 1.537136] ata_piix 0000:00:1f.2: enabling device (0005 -> 0007)
[ 1.537154] ata_piix 0000:00:1f.2: MAP [ P0 P2 P1 P3 ]
[ 1.537225] ata_piix 0000:00:1f.2: setting latency timer to 64
[ 1.544343] scsi0 : ata_piix
[ 1.551241] scsi1 : ata_piix
[ 1.555306] ata1: SATA max UDMA/133 cmd 0x1f0 ctl 0x3f6 bmdma 0xff90 irq 14
[ 1.555315] ata2: SATA max UDMA/133 cmd 0x170 ctl 0x376 bmdma 0xff98 irq 15
[ 1.638718] microcode: CPU1 sig=0x106ca, pf=0x8, revision=0x107
[ 1.645871] microcode: Microcode Update Driver: v2.00 <tigran@aivazian.fsnet.co.uk>, Peter Oruba
[ 1.755979] ata1.00: ATA-7: ST3320820AS, 3.AAC, max UDMA/133
[ 1.755989] ata1.00: 625142448 sectors, multi 16: LBA48 NCQ (depth 0/32)
[ 1.830928] ata1.00: configured for UDMA/133
[ 1.831165] scsi 0:0:0:0: Direct-Access ATA ST3320820AS 3.AA PQ: 0 ANSI: 5
[ 1.845196] sd 0:0:0:0: [sda] 625142448 512-byte logical blocks: (320 GB/298 GiB)
[ 1.845375] sd 0:0:0:0: [sda] Write Protect is off
[ 1.845384] sd 0:0:0:0: [sda] Mode Sense: 00 3a 00 00
[ 1.845462] sd 0:0:0:0: [sda] Write cache: enabled, read cache: enabled, doesn't support DPO or FUA
[ 1.890760] sda: sda1 sda2 < sda5 >
[ 1.891860] sd 0:0:0:0: [sda] Attached SCSI disk
[ 1.896615] sd 0:0:0:0: Attached scsi generic sg0 type 0
[ 7.269889] PM: Starting manual resume from disk
[ 7.269899] PM: Hibernation image partition 8:5 present
[ 7.269904] PM: Looking for hibernation image.
[ 7.270213] PM: Image not found (code -22)
[ 7.270219] PM: Hibernation image not present or could not be loaded.
[ 7.419013] EXT4-fs (sda1): mounted filesystem with ordered data mode. Opts: (null)
[ 9.278178] udevd[324]: starting version 175
[ 9.690132] input: Power Button as /devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0C:00/input/input1
[ 9.690146] ACPI: Power Button [PWRB]
[ 9.690766] input: Power Button as /devices/LNXSYSTM:00/LNXPWRBN:00/input/input2
[ 9.690778] ACPI: Power Button [PWRF]
[ 9.734918] [drm] Initialized drm 1.1.0 20060810
[ 9.835515] i915 0000:00:02.0: setting latency timer to 64
[ 9.840307] iTCO_vendor_support: vendor-support=0
[ 9.841839] iTCO_wdt: Intel TCO WatchDog Timer Driver v1.07
[ 9.842020] iTCO_wdt: Found a NM10 TCO device (Version=2, TCOBASE=0x0860)
[ 9.856081] iTCO_wdt: initialized. heartbeat=30 sec (nowayout=0)
[ 10.022324] [drm] Supports vblank timestamp caching Rev 1 (10.10.2010).
[ 10.022332] [drm] Driver supports precise vblank timestamp query.
[ 10.022414] vgaarb: device changed decodes: PCI:0000:00:02.0,olddecodes=io+mem,decodes=io+mem:owns=io+mem
[ 10.023245] fixme: max PWM is zero.
[ 10.059369] [drm] initialized overlay support
[ 10.079100] fbcon: inteldrmfb (fb0) is primary device
[ 10.121732] [drm] Changing LVDS panel from (+hsync, +vsync) to (-hsync, -vsync)
[ 10.161398] coretemp coretemp.0: Using relative temperature scale!
[ 10.161440] coretemp coretemp.0: Using relative temperature scale!
[ 10.185033] parport_pc 00:06: reported by Plug and Play ACPI
[ 10.185089] parport0: PC-style at 0x378 (0x778), irq 7 [PCSPP,TRISTATE]
[ 10.199478] Console: switching to colour frame buffer device 128x48
[ 10.208484] fb0: inteldrmfb frame buffer device
[ 10.208491] drm: registered panic notifier
[ 10.208517] No ACPI video bus found
[ 10.209226] [drm] Initialized i915 1.6.0 20080730 for 0000:00:02.0 on minor 0
[ 11.973317] Adding 4173820k swap on /dev/sda5. Priority:-1 extents:1 across:4173820k
[ 12.006082] EXT4-fs (sda1): re-mounted. Opts: (null)
[ 12.279896] EXT4-fs (sda1): re-mounted. Opts: errors=remount-ro
[ 12.459478] loop: module loaded
[ 14.861416] RPC: Registered named UNIX socket transport module.
[ 14.861425] RPC: Registered udp transport module.
[ 14.861431] RPC: Registered tcp transport module.
[ 14.861435] RPC: Registered tcp NFSv4.1 backchannel transport module.
[ 14.917338] FS-Cache: Loaded
[ 14.959463] NFS: Registering the id_resolver key type
[ 14.959515] FS-Cache: Netfs 'nfs' registered for caching
[ 14.969536] Installing knfsd (copyright (C) 1996 okir@monad.swb.de).
[ 17.682212] input: ACPI Virtual Keyboard Device as /devices/virtual/input/input3
[ 18.778149] Bluetooth: Core ver 2.16
[ 18.778719] NET: Registered protocol family 31
[ 18.778727] Bluetooth: HCI device and connection manager initialized
[ 18.778734] Bluetooth: HCI socket layer initialized
[ 18.778740] Bluetooth: L2CAP socket layer initialized
[ 18.778756] Bluetooth: SCO socket layer initialized
[ 18.794324] Bluetooth: RFCOMM TTY layer initialized
[ 18.794341] Bluetooth: RFCOMM socket layer initialized
[ 18.794348] Bluetooth: RFCOMM ver 1.11
[ 18.906866] Bluetooth: BNEP (Ethernet Emulation) ver 1.3
[ 18.906876] Bluetooth: BNEP filters: protocol multicast
[ 19.565531] lp0: using parport0 (interrupt-driven).
[ 19.704223] ppdev: user-space parallel port driver
[ 158.208042] usb 4-1: new low-speed USB device number 2 using uhci_hcd
[ 158.376056] usb 4-1: New USB device found, idVendor=192f, idProduct=0916
[ 158.376066] usb 4-1: New USB device strings: Mfr=0, Product=2, SerialNumber=0
[ 158.376087] usb 4-1: Product: USB Optical Mouse
[ 158.488242] input: USB Optical Mouse as /devices/pci0000:00/0000:00:1d.2/usb4/4-1/4-1:1.0/input/input4
[ 158.488967] generic-usb 0003:192F:0916.0001: input,hidraw0: USB HID v1.11 Mouse [USB Optical Mouse] on usb-0000:00:1d.2-1/input0
[ 158.489632] usbcore: registered new interface driver usbhid
[ 158.489640] usbhid: USB HID core driver
[ 194.288046] usb 1-6: new high-speed USB device number 3 using ehci_hcd
[ 194.420922] usb 1-6: New USB device found, idVendor=18d1, idProduct=4ee1
[ 194.420932] usb 1-6: New USB device strings: Mfr=1, Product=2, SerialNumber=3
[ 194.420939] usb 1-6: Product: Nexus 5
[ 194.420944] usb 1-6: Manufacturer: LGE
[ 194.420950] usb 1-6: SerialNumber: 03b7f2223437cad1
[ 318.575481] usb 1-6: USB disconnect, device number 3
[ 318.844045] usb 1-6: new high-speed USB device number 4 using ehci_hcd
[ 318.976954] usb 1-6: New USB device found, idVendor=18d1, idProduct=4ee3
[ 318.976963] usb 1-6: New USB device strings: Mfr=1, Product=2, SerialNumber=3
[ 318.976970] usb 1-6: Product: Nexus 5
[ 318.976975] usb 1-6: Manufacturer: LGE
[ 318.976980] usb 1-6: SerialNumber: 03b7f2223437cad1
[ 319.056794] usbcore: registered new interface driver cdc_ether
[ 319.061632] rndis_host 1-6:1.0: usb0: register 'rndis_host' at usb-0000:00:1d.7-6, RNDIS device, 76:2a:c0:26:29:99
[ 319.062353] usbcore: registered new interface driver rndis_host
[ 329.632028] usb0: no IPv6 routers present
[ 868.865944] I-pipe: head domain RTAI registered.
[ 868.865959] RTAI[hal]: compiled with gcc version 4.7.2 (Debian 4.7.2-5) .
[ 868.866057] RTAI[hal]: mounted (IPIPE-NOTHREADS, IMMEDIATE (INTERNAL IRQs DISPATCHED), ISOL_CPUS_MASK: 0).
[ 868.866066] SYSINFO: CPUs 2, LINUX APIC IRQ 2312, TIM_FREQ 12465440, CLK_FREQ 1795052000, CPU_FREQ 1795052000
[ 868.866074] RTAI_APIC_TIMER_IPI: RTAI DEFINED 2314, VECTOR 2314; LINUX_APIC_TIMER_IPI: RTAI DEFINED 2312, VECTOR 2312
[ 868.866082] TIMER NAME: lapic; VARIOUSLY FOUND APIC FREQs: 12465440, 12465440, 12342250
[ 868.924504] RTAI[malloc]: global heap size = 2097152 bytes, <BSD>.
[ 868.924585] , <uses LINUX SYSCALLs>, kstacks pool size = 524288 bytes.
[ 868.924597] RTAI[sched]: hard timer type/freq = APIC/12465440(Hz); default timing: oneshot; linear timed lists.
[ 868.924606] RTAI[sched]: Linux timer freq = 250 (Hz), TimeBase freq = 1795052000 hz.
[ 868.924612] RTAI[sched]: timer setup = 999 ns, resched latency = 2943 ns.
[ 868.956331] RTAI[math]: loaded.
[ 869.253812] hm2: loading Mesa HostMot2 driver version 0.15
[ 869.272709] hm2_pci: loading Mesa AnyIO HostMot2 driver version 0.7
[ 869.272793] hm2_pci: discovered 5i25 at 0000:01:00.0
[ 869.275909] hm2/hm2_5i25.0: Smart Serial Firmware Version 43
[ 869.332994] Board hm2_5i25.0.7i77.0.0 Hardware Mode 0 = standard
[ 869.335899] Board hm2_5i25.0.7i77.0.0 Software Mode 0 = input_output
[ 869.338526] Board hm2_5i25.0.7i77.0.0 Software Mode 1 = io_analog
[ 869.342881] Board hm2_5i25.0.7i77.0.0 Software Mode 2 = io_analog_fieldvoltage
[ 869.348313] Board hm2_5i25.0.7i77.0.0 Software Mode 3 = io_encoder_analog_fieldvoltage
[ 869.444614] Board hm2_5i25.0.7i77.0.1 Hardware Mode 0 = standard
[ 869.447193] Board hm2_5i25.0.7i77.0.1 Software Mode 0 = analogout_enables
[ 869.529635] Board hm2_5i25.0.7i76.0.3 Hardware Mode 0 = standard
[ 869.531746] Board hm2_5i25.0.7i76.0.3 Software Mode 0 = io_spin
[ 869.534596] Board hm2_5i25.0.7i76.0.3 Software Mode 1 = io_ana_spin
[ 869.538413] Board hm2_5i25.0.7i76.0.3 Software Mode 2 = io_enc_ana_spin_fv
[ 869.620523] hm2/hm2_5i25.0: Warning: sserial remote device 7i76 channel 3 has old firmware that should be updated
[ 869.699469] hm2/hm2_5i25.0: 34 I/O Pins used:
[ 869.699480] hm2/hm2_5i25.0: IO Pin 000 (P3-01): IOPort
[ 869.699487] hm2/hm2_5i25.0: IO Pin 001 (P3-14): IOPort
[ 869.699493] hm2/hm2_5i25.0: IO Pin 002 (P3-02): IOPort
[ 869.699501] hm2/hm2_5i25.0: IO Pin 003 (P3-15): Smart Serial Interface #0, pin TxData1 (Output)
[ 869.699509] hm2/hm2_5i25.0: IO Pin 004 (P3-03): Smart Serial Interface #0, pin RxData1 (Input)
[ 869.699517] hm2/hm2_5i25.0: IO Pin 005 (P3-16): Smart Serial Interface #0, pin TxData0 (Output)
[ 869.699527] hm2/hm2_5i25.0: IO Pin 006 (P3-04): Smart Serial Interface #0, pin RxData0 (Input)
[ 869.699535] hm2/hm2_5i25.0: IO Pin 007 (P3-17): Muxed Encoder Select #0, pin Mux Select 0 (Output)
[ 869.699544] hm2/hm2_5i25.0: IO Pin 008 (P3-05): Muxed Encoder #0, pin Muxed A (Input)
[ 869.699551] hm2/hm2_5i25.0: IO Pin 009 (P3-06): Muxed Encoder #0, pin Muxed B (Input)
[ 869.699559] hm2/hm2_5i25.0: IO Pin 010 (P3-07): Muxed Encoder #0, pin Muxed Index (Input)
[ 869.699567] hm2/hm2_5i25.0: IO Pin 011 (P3-08): Muxed Encoder #1, pin Muxed A (Input)
[ 869.699575] hm2/hm2_5i25.0: IO Pin 012 (P3-09): Muxed Encoder #1, pin Muxed B (Input)
[ 869.699582] hm2/hm2_5i25.0: IO Pin 013 (P3-10): Muxed Encoder #1, pin Muxed Index (Input)
[ 869.699590] hm2/hm2_5i25.0: IO Pin 014 (P3-11): Muxed Encoder #2, pin Muxed A (Input)
[ 869.699598] hm2/hm2_5i25.0: IO Pin 015 (P3-12): Muxed Encoder #2, pin Muxed B (Input)
[ 869.699606] hm2/hm2_5i25.0: IO Pin 016 (P3-13): Muxed Encoder #2, pin Muxed Index (Input)
[ 869.699614] hm2/hm2_5i25.0: IO Pin 017 (P2-01): StepGen #0, pin Direction (Output)
[ 869.699622] hm2/hm2_5i25.0: IO Pin 018 (P2-14): StepGen #0, pin Step (Output)
[ 869.699629] hm2/hm2_5i25.0: IO Pin 019 (P2-02): StepGen #1, pin Direction (Output)
[ 869.699637] hm2/hm2_5i25.0: IO Pin 020 (P2-15): StepGen #1, pin Step (Output)
[ 869.699644] hm2/hm2_5i25.0: IO Pin 021 (P2-03): StepGen #2, pin Direction (Output)
[ 869.699652] hm2/hm2_5i25.0: IO Pin 022 (P2-16): StepGen #2, pin Step (Output)
[ 869.699659] hm2/hm2_5i25.0: IO Pin 023 (P2-04): StepGen #3, pin Direction (Output)
[ 869.699667] hm2/hm2_5i25.0: IO Pin 024 (P2-17): StepGen #3, pin Step (Output)
[ 869.699674] hm2/hm2_5i25.0: IO Pin 025 (P2-05): StepGen #4, pin Direction (Output)
[ 869.699682] hm2/hm2_5i25.0: IO Pin 026 (P2-06): StepGen #4, pin Step (Output)
[ 869.699690] hm2/hm2_5i25.0: IO Pin 027 (P2-07): Smart Serial Interface #0, pin TxData3 (Output)
[ 869.699698] hm2/hm2_5i25.0: IO Pin 028 (P2-08): Smart Serial Interface #0, pin RxData3 (Input)
[ 869.699705] hm2/hm2_5i25.0: IO Pin 029 (P2-09): IOPort
[ 869.699711] hm2/hm2_5i25.0: IO Pin 030 (P2-10): IOPort
[ 869.699717] hm2/hm2_5i25.0: IO Pin 031 (P2-11): IOPort
[ 869.699723] hm2/hm2_5i25.0: IO Pin 032 (P2-12): IOPort
[ 869.699730] hm2/hm2_5i25.0: IO Pin 033 (P2-13): IOPort
[ 869.700199] hm2/hm2_5i25.0: registered
[ 869.700206] hm2_5i25.0: initialized AnyIO board at 0000:01:00.0
[ 869.760504] classicladder_rt: module license 'LGPL' taints kernel.
[ 869.760513] Disabling lock debugging due to kernel taint
[ 869.761747] creating ladder-state
[ 1258.535137] hm2_5i25.0: dropping AnyIO board at 0000:01:00.0
[ 1258.535150] hm2/hm2_5i25.0: unregistered
[ 1258.535782] hm2_pci: driver unloaded
[ 1258.547736] hm2: unloading
[ 1260.886895] RTAI[math]: unloaded.
[ 1260.891699] SCHED releases registered named ALIEN PEDV$D
[ 1260.912217] RTAI[malloc]: unloaded.
[ 1261.012382] RTAI[sched]: unloaded (forced hard/soft/hard transitions: traps 0, syscalls 0).
[ 1261.017588] I-pipe: head domain RTAI unregistered.
[ 1261.017694] RTAI[hal]: unmounted.
[ 1264.155805] I-pipe: head domain RTAI registered.
[ 1264.155820] RTAI[hal]: compiled with gcc version 4.7.2 (Debian 4.7.2-5) .
[ 1264.155919] RTAI[hal]: mounted (IPIPE-NOTHREADS, IMMEDIATE (INTERNAL IRQs DISPATCHED), ISOL_CPUS_MASK: 0).
[ 1264.155928] SYSINFO: CPUs 2, LINUX APIC IRQ 2312, TIM_FREQ 12465440, CLK_FREQ 1795052000, CPU_FREQ 1795052000
[ 1264.155936] RTAI_APIC_TIMER_IPI: RTAI DEFINED 2314, VECTOR 2314; LINUX_APIC_TIMER_IPI: RTAI DEFINED 2312, VECTOR 2312
[ 1264.155944] TIMER NAME: lapic; VARIOUSLY FOUND APIC FREQs: 12465440, 12465440, 12361500
[ 1264.170638] RTAI[malloc]: global heap size = 2097152 bytes, <BSD>.
[ 1264.170720] , <uses LINUX SYSCALLs>, kstacks pool size = 524288 bytes.
[ 1264.170732] RTAI[sched]: hard timer type/freq = APIC/12465440(Hz); default timing: oneshot; linear timed lists.
[ 1264.170740] RTAI[sched]: Linux timer freq = 250 (Hz), TimeBase freq = 1795052000 hz.
[ 1264.170746] RTAI[sched]: timer setup = 999 ns, resched latency = 2943 ns.
[ 1264.193548] RTAI[math]: loaded.
[ 1264.407128] hm2: loading Mesa HostMot2 driver version 0.15
[ 1264.412337] hm2_pci: loading Mesa AnyIO HostMot2 driver version 0.7
[ 1264.412401] hm2_pci: discovered 5i25 at 0000:01:00.0
[ 1264.415914] hm2/hm2_5i25.0: Smart Serial Firmware Version 43
[ 1264.473116] Board hm2_5i25.0.7i77.0.0 Hardware Mode 0 = standard
[ 1264.475936] Board hm2_5i25.0.7i77.0.0 Software Mode 0 = input_output
[ 1264.478491] Board hm2_5i25.0.7i77.0.0 Software Mode 1 = io_analog
[ 1264.482880] Board hm2_5i25.0.7i77.0.0 Software Mode 2 = io_analog_fieldvoltage
[ 1264.488443] Board hm2_5i25.0.7i77.0.0 Software Mode 3 = io_encoder_analog_fieldvoltage
[ 1264.584512] Board hm2_5i25.0.7i77.0.1 Hardware Mode 0 = standard
[ 1264.587091] Board hm2_5i25.0.7i77.0.1 Software Mode 0 = analogout_enables
[ 1264.669227] Board hm2_5i25.0.7i76.0.3 Hardware Mode 0 = standard
[ 1264.671339] Board hm2_5i25.0.7i76.0.3 Software Mode 0 = io_spin
[ 1264.674190] Board hm2_5i25.0.7i76.0.3 Software Mode 1 = io_ana_spin
[ 1264.677975] Board hm2_5i25.0.7i76.0.3 Software Mode 2 = io_enc_ana_spin_fv
[ 1264.759676] hm2/hm2_5i25.0: Warning: sserial remote device 7i76 channel 3 has old firmware that should be updated
[ 1264.836229] hm2/hm2_5i25.0: 34 I/O Pins used:
[ 1264.836239] hm2/hm2_5i25.0: IO Pin 000 (P3-01): IOPort
[ 1264.836246] hm2/hm2_5i25.0: IO Pin 001 (P3-14): IOPort
[ 1264.836252] hm2/hm2_5i25.0: IO Pin 002 (P3-02): IOPort
[ 1264.836260] hm2/hm2_5i25.0: IO Pin 003 (P3-15): Smart Serial Interface #0, pin TxData1 (Output)
[ 1264.836269] hm2/hm2_5i25.0: IO Pin 004 (P3-03): Smart Serial Interface #0, pin RxData1 (Input)
[ 1264.836277] hm2/hm2_5i25.0: IO Pin 005 (P3-16): Smart Serial Interface #0, pin TxData0 (Output)
[ 1264.836285] hm2/hm2_5i25.0: IO Pin 006 (P3-04): Smart Serial Interface #0, pin RxData0 (Input)
[ 1264.836293] hm2/hm2_5i25.0: IO Pin 007 (P3-17): Muxed Encoder Select #0, pin Mux Select 0 (Output)
[ 1264.836302] hm2/hm2_5i25.0: IO Pin 008 (P3-05): Muxed Encoder #0, pin Muxed A (Input)
[ 1264.836309] hm2/hm2_5i25.0: IO Pin 009 (P3-06): Muxed Encoder #0, pin Muxed B (Input)
[ 1264.836317] hm2/hm2_5i25.0: IO Pin 010 (P3-07): Muxed Encoder #0, pin Muxed Index (Input)
[ 1264.836325] hm2/hm2_5i25.0: IO Pin 011 (P3-08): Muxed Encoder #1, pin Muxed A (Input)
[ 1264.836333] hm2/hm2_5i25.0: IO Pin 012 (P3-09): Muxed Encoder #1, pin Muxed B (Input)
[ 1264.836340] hm2/hm2_5i25.0: IO Pin 013 (P3-10): Muxed Encoder #1, pin Muxed Index (Input)
[ 1264.836348] hm2/hm2_5i25.0: IO Pin 014 (P3-11): Muxed Encoder #2, pin Muxed A (Input)
[ 1264.836356] hm2/hm2_5i25.0: IO Pin 015 (P3-12): Muxed Encoder #2, pin Muxed B (Input)
[ 1264.836364] hm2/hm2_5i25.0: IO Pin 016 (P3-13): Muxed Encoder #2, pin Muxed Index (Input)
[ 1264.836372] hm2/hm2_5i25.0: IO Pin 017 (P2-01): StepGen #0, pin Direction (Output)
[ 1264.836380] hm2/hm2_5i25.0: IO Pin 018 (P2-14): StepGen #0, pin Step (Output)
[ 1264.836387] hm2/hm2_5i25.0: IO Pin 019 (P2-02): StepGen #1, pin Direction (Output)
[ 1264.836395] hm2/hm2_5i25.0: IO Pin 020 (P2-15): StepGen #1, pin Step (Output)
[ 1264.836402] hm2/hm2_5i25.0: IO Pin 021 (P2-03): StepGen #2, pin Direction (Output)
[ 1264.836410] hm2/hm2_5i25.0: IO Pin 022 (P2-16): StepGen #2, pin Step (Output)
[ 1264.836418] hm2/hm2_5i25.0: IO Pin 023 (P2-04): StepGen #3, pin Direction (Output)
[ 1264.836425] hm2/hm2_5i25.0: IO Pin 024 (P2-17): StepGen #3, pin Step (Output)
[ 1264.836433] hm2/hm2_5i25.0: IO Pin 025 (P2-05): StepGen #4, pin Direction (Output)
[ 1264.836440] hm2/hm2_5i25.0: IO Pin 026 (P2-06): StepGen #4, pin Step (Output)
[ 1264.837556] hm2/hm2_5i25.0: IO Pin 027 (P2-07): Smart Serial Interface #0, pin TxData3 (Output)
[ 1264.837569] hm2/hm2_5i25.0: IO Pin 028 (P2-08): Smart Serial Interface #0, pin RxData3 (Input)
[ 1264.837576] hm2/hm2_5i25.0: IO Pin 029 (P2-09): IOPort
[ 1264.837583] hm2/hm2_5i25.0: IO Pin 030 (P2-10): IOPort
[ 1264.837589] hm2/hm2_5i25.0: IO Pin 031 (P2-11): IOPort
[ 1264.837595] hm2/hm2_5i25.0: IO Pin 032 (P2-12): IOPort
[ 1264.837601] hm2/hm2_5i25.0: IO Pin 033 (P2-13): IOPort
[ 1264.838089] hm2/hm2_5i25.0: registered
[ 1264.838096] hm2_5i25.0: initialized AnyIO board at 0000:01:00.0
[ 1264.852305] creating ladder-state
[ 1265.508114] hm2_5i25.0: dropping AnyIO board at 0000:01:00.0
[ 1265.508128] hm2/hm2_5i25.0: unregistered
[ 1265.509090] hm2_pci: driver unloaded
[ 1265.513771] hm2: unloading
[ 1267.766506] RTAI[math]: unloaded.
[ 1267.771300] SCHED releases registered named ALIEN PEDV$D
[ 1267.787803] RTAI[malloc]: unloaded.
[ 1267.884048] RTAI[sched]: unloaded (forced hard/soft/hard transitions: traps 0, syscalls 0).
[ 1267.887972] I-pipe: head domain RTAI unregistered.
[ 1267.888408] RTAI[hal]: unmounted.
[ 1305.900969] I-pipe: head domain RTAI registered.
[ 1305.900983] RTAI[hal]: compiled with gcc version 4.7.2 (Debian 4.7.2-5) .
[ 1305.901081] RTAI[hal]: mounted (IPIPE-NOTHREADS, IMMEDIATE (INTERNAL IRQs DISPATCHED), ISOL_CPUS_MASK: 0).
[ 1305.901090] SYSINFO: CPUs 2, LINUX APIC IRQ 2312, TIM_FREQ 12465440, CLK_FREQ 1795052000, CPU_FREQ 1795052000
[ 1305.901098] RTAI_APIC_TIMER_IPI: RTAI DEFINED 2314, VECTOR 2314; LINUX_APIC_TIMER_IPI: RTAI DEFINED 2312, VECTOR 2312
[ 1305.901106] TIMER NAME: lapic; VARIOUSLY FOUND APIC FREQs: 12465440, 12465440, 12357000
[ 1305.923059] RTAI[malloc]: global heap size = 2097152 bytes, <BSD>.
[ 1305.923141] , <uses LINUX SYSCALLs>, kstacks pool size = 524288 bytes.
[ 1305.923154] RTAI[sched]: hard timer type/freq = APIC/12465440(Hz); default timing: oneshot; linear timed lists.
[ 1305.923163] RTAI[sched]: Linux timer freq = 250 (Hz), TimeBase freq = 1795052000 hz.
[ 1305.923169] RTAI[sched]: timer setup = 999 ns, resched latency = 2943 ns.
[ 1305.946017] RTAI[math]: loaded.
[ 1306.160676] hm2: loading Mesa HostMot2 driver version 0.15
[ 1306.165695] hm2_pci: loading Mesa AnyIO HostMot2 driver version 0.7
[ 1306.165759] hm2_pci: discovered 5i25 at 0000:01:00.0
[ 1306.169277] hm2/hm2_5i25.0: Smart Serial Firmware Version 43
[ 1306.226459] Board hm2_5i25.0.7i77.0.0 Hardware Mode 0 = standard
[ 1306.229414] Board hm2_5i25.0.7i77.0.0 Software Mode 0 = input_output
[ 1306.231822] Board hm2_5i25.0.7i77.0.0 Software Mode 1 = io_analog
[ 1306.236182] Board hm2_5i25.0.7i77.0.0 Software Mode 2 = io_analog_fieldvoltage
[ 1306.241583] Board hm2_5i25.0.7i77.0.0 Software Mode 3 = io_encoder_analog_fieldvoltage
[ 1306.337419] Board hm2_5i25.0.7i77.0.1 Hardware Mode 0 = standard
[ 1306.339999] Board hm2_5i25.0.7i77.0.1 Software Mode 0 = analogout_enables
[ 1306.422362] Board hm2_5i25.0.7i76.0.3 Hardware Mode 0 = standard
[ 1306.424684] Board hm2_5i25.0.7i76.0.3 Software Mode 0 = io_spin
[ 1306.427359] Board hm2_5i25.0.7i76.0.3 Software Mode 1 = io_ana_spin
[ 1306.431090] Board hm2_5i25.0.7i76.0.3 Software Mode 2 = io_enc_ana_spin_fv
[ 1306.512870] hm2/hm2_5i25.0: Warning: sserial remote device 7i76 channel 3 has old firmware that should be updated
[ 1306.589226] hm2/hm2_5i25.0: 34 I/O Pins used:
[ 1306.589236] hm2/hm2_5i25.0: IO Pin 000 (P3-01): IOPort
[ 1306.589243] hm2/hm2_5i25.0: IO Pin 001 (P3-14): IOPort
[ 1306.589249] hm2/hm2_5i25.0: IO Pin 002 (P3-02): IOPort
[ 1306.589257] hm2/hm2_5i25.0: IO Pin 003 (P3-15): Smart Serial Interface #0, pin TxData1 (Output)
[ 1306.589265] hm2/hm2_5i25.0: IO Pin 004 (P3-03): Smart Serial Interface #0, pin RxData1 (Input)
[ 1306.589273] hm2/hm2_5i25.0: IO Pin 005 (P3-16): Smart Serial Interface #0, pin TxData0 (Output)
[ 1306.589281] hm2/hm2_5i25.0: IO Pin 006 (P3-04): Smart Serial Interface #0, pin RxData0 (Input)
[ 1306.589290] hm2/hm2_5i25.0: IO Pin 007 (P3-17): Muxed Encoder Select #0, pin Mux Select 0 (Output)
[ 1306.589298] hm2/hm2_5i25.0: IO Pin 008 (P3-05): Muxed Encoder #0, pin Muxed A (Input)
[ 1306.589306] hm2/hm2_5i25.0: IO Pin 009 (P3-06): Muxed Encoder #0, pin Muxed B (Input)
[ 1306.589313] hm2/hm2_5i25.0: IO Pin 010 (P3-07): Muxed Encoder #0, pin Muxed Index (Input)
[ 1306.589321] hm2/hm2_5i25.0: IO Pin 011 (P3-08): Muxed Encoder #1, pin Muxed A (Input)
[ 1306.589329] hm2/hm2_5i25.0: IO Pin 012 (P3-09): Muxed Encoder #1, pin Muxed B (Input)
[ 1306.589337] hm2/hm2_5i25.0: IO Pin 013 (P3-10): Muxed Encoder #1, pin Muxed Index (Input)
[ 1306.589345] hm2/hm2_5i25.0: IO Pin 014 (P3-11): Muxed Encoder #2, pin Muxed A (Input)
[ 1306.589352] hm2/hm2_5i25.0: IO Pin 015 (P3-12): Muxed Encoder #2, pin Muxed B (Input)
[ 1306.589360] hm2/hm2_5i25.0: IO Pin 016 (P3-13): Muxed Encoder #2, pin Muxed Index (Input)
[ 1306.589368] hm2/hm2_5i25.0: IO Pin 017 (P2-01): StepGen #0, pin Direction (Output)
[ 1306.589376] hm2/hm2_5i25.0: IO Pin 018 (P2-14): StepGen #0, pin Step (Output)
[ 1306.589384] hm2/hm2_5i25.0: IO Pin 019 (P2-02): StepGen #1, pin Direction (Output)
[ 1306.589391] hm2/hm2_5i25.0: IO Pin 020 (P2-15): StepGen #1, pin Step (Output)
[ 1306.589399] hm2/hm2_5i25.0: IO Pin 021 (P2-03): StepGen #2, pin Direction (Output)
[ 1306.589406] hm2/hm2_5i25.0: IO Pin 022 (P2-16): StepGen #2, pin Step (Output)
[ 1306.589414] hm2/hm2_5i25.0: IO Pin 023 (P2-04): StepGen #3, pin Direction (Output)
[ 1306.589422] hm2/hm2_5i25.0: IO Pin 024 (P2-17): StepGen #3, pin Step (Output)
[ 1306.589429] hm2/hm2_5i25.0: IO Pin 025 (P2-05): StepGen #4, pin Direction (Output)
[ 1306.589437] hm2/hm2_5i25.0: IO Pin 026 (P2-06): StepGen #4, pin Step (Output)
[ 1306.589445] hm2/hm2_5i25.0: IO Pin 027 (P2-07): Smart Serial Interface #0, pin TxData3 (Output)
[ 1306.589453] hm2/hm2_5i25.0: IO Pin 028 (P2-08): Smart Serial Interface #0, pin RxData3 (Input)
[ 1306.589460] hm2/hm2_5i25.0: IO Pin 029 (P2-09): IOPort
[ 1306.589466] hm2/hm2_5i25.0: IO Pin 030 (P2-10): IOPort
[ 1306.589472] hm2/hm2_5i25.0: IO Pin 031 (P2-11): IOPort
[ 1306.589478] hm2/hm2_5i25.0: IO Pin 032 (P2-12): IOPort
[ 1306.589485] hm2/hm2_5i25.0: IO Pin 033 (P2-13): IOPort
[ 1306.589951] hm2/hm2_5i25.0: registered
[ 1306.589957] hm2_5i25.0: initialized AnyIO board at 0000:01:00.0
[ 1306.605086] creating ladder-state
[ 1307.245326] hm2_5i25.0: dropping AnyIO board at 0000:01:00.0
[ 1307.245340] hm2/hm2_5i25.0: unregistered
[ 1307.245972] hm2_pci: driver unloaded
[ 1307.250678] hm2: unloading
[ 1309.500413] RTAI[math]: unloaded.
[ 1309.506290] SCHED releases registered named ALIEN PEDV$D
[ 1309.523543] RTAI[malloc]: unloaded.
[ 1309.620050] RTAI[sched]: unloaded (forced hard/soft/hard transitions: traps 0, syscalls 0).
[ 1309.625777] I-pipe: head domain RTAI unregistered.
[ 1309.625887] RTAI[hal]: unmounted.
[ 1698.597920] I-pipe: head domain RTAI registered.
[ 1698.597935] RTAI[hal]: compiled with gcc version 4.7.2 (Debian 4.7.2-5) .
[ 1698.598035] RTAI[hal]: mounted (IPIPE-NOTHREADS, IMMEDIATE (INTERNAL IRQs DISPATCHED), ISOL_CPUS_MASK: 0).
[ 1698.598044] SYSINFO: CPUs 2, LINUX APIC IRQ 2312, TIM_FREQ 12465440, CLK_FREQ 1795052000, CPU_FREQ 1795052000
[ 1698.598052] RTAI_APIC_TIMER_IPI: RTAI DEFINED 2314, VECTOR 2314; LINUX_APIC_TIMER_IPI: RTAI DEFINED 2312, VECTOR 2312
[ 1698.598060] TIMER NAME: lapic; VARIOUSLY FOUND APIC FREQs: 12465440, 12465440, 12335500
[ 1698.619983] RTAI[malloc]: global heap size = 2097152 bytes, <BSD>.
[ 1698.620410] , <uses LINUX SYSCALLs>, kstacks pool size = 524288 bytes.
[ 1698.620424] RTAI[sched]: hard timer type/freq = APIC/12465440(Hz); default timing: oneshot; linear timed lists.
[ 1698.620433] RTAI[sched]: Linux timer freq = 250 (Hz), TimeBase freq = 1795052000 hz.
[ 1698.620439] RTAI[sched]: timer setup = 999 ns, resched latency = 2943 ns.
[ 1698.642914] RTAI[math]: loaded.
[ 1698.858886] hm2: loading Mesa HostMot2 driver version 0.15
[ 1698.863959] hm2_pci: loading Mesa AnyIO HostMot2 driver version 0.7
[ 1698.864023] hm2_pci: discovered 5i25 at 0000:01:00.0
[ 1698.867639] hm2/hm2_5i25.0: Smart Serial Firmware Version 43
[ 1698.924707] Board hm2_5i25.0.7i77.0.0 Hardware Mode 0 = standard
[ 1698.927486] Board hm2_5i25.0.7i77.0.0 Software Mode 0 = input_output
[ 1698.930145] Board hm2_5i25.0.7i77.0.0 Software Mode 1 = io_analog
[ 1698.934478] Board hm2_5i25.0.7i77.0.0 Software Mode 2 = io_analog_fieldvoltage
[ 1698.939892] Board hm2_5i25.0.7i77.0.0 Software Mode 3 = io_encoder_analog_fieldvoltage
[ 1699.035812] Board hm2_5i25.0.7i77.0.1 Hardware Mode 0 = standard
[ 1699.038593] Board hm2_5i25.0.7i77.0.1 Software Mode 0 = analogout_enables
[ 1699.120827] Board hm2_5i25.0.7i76.0.3 Hardware Mode 0 = standard
[ 1699.122938] Board hm2_5i25.0.7i76.0.3 Software Mode 0 = io_spin
[ 1699.125791] Board hm2_5i25.0.7i76.0.3 Software Mode 1 = io_ana_spin
[ 1699.129628] Board hm2_5i25.0.7i76.0.3 Software Mode 2 = io_enc_ana_spin_fv
[ 1699.212724] hm2/hm2_5i25.0: Warning: sserial remote device 7i76 channel 3 has old firmware that should be updated
[ 1699.289388] hm2/hm2_5i25.0: 34 I/O Pins used:
[ 1699.289398] hm2/hm2_5i25.0: IO Pin 000 (P3-01): IOPort
[ 1699.289405] hm2/hm2_5i25.0: IO Pin 001 (P3-14): IOPort
[ 1699.289411] hm2/hm2_5i25.0: IO Pin 002 (P3-02): IOPort
[ 1699.289419] hm2/hm2_5i25.0: IO Pin 003 (P3-15): Smart Serial Interface #0, pin TxData1 (Output)
[ 1699.289428] hm2/hm2_5i25.0: IO Pin 004 (P3-03): Smart Serial Interface #0, pin RxData1 (Input)
[ 1699.289436] hm2/hm2_5i25.0: IO Pin 005 (P3-16): Smart Serial Interface #0, pin TxData0 (Output)
[ 1699.289444] hm2/hm2_5i25.0: IO Pin 006 (P3-04): Smart Serial Interface #0, pin RxData0 (Input)
[ 1699.289453] hm2/hm2_5i25.0: IO Pin 007 (P3-17): Muxed Encoder Select #0, pin Mux Select 0 (Output)
[ 1699.289461] hm2/hm2_5i25.0: IO Pin 008 (P3-05): Muxed Encoder #0, pin Muxed A (Input)
[ 1699.289468] hm2/hm2_5i25.0: IO Pin 009 (P3-06): Muxed Encoder #0, pin Muxed B (Input)
[ 1699.289476] hm2/hm2_5i25.0: IO Pin 010 (P3-07): Muxed Encoder #0, pin Muxed Index (Input)
[ 1699.289484] hm2/hm2_5i25.0: IO Pin 011 (P3-08): Muxed Encoder #1, pin Muxed A (Input)
[ 1699.289492] hm2/hm2_5i25.0: IO Pin 012 (P3-09): Muxed Encoder #1, pin Muxed B (Input)
[ 1699.289500] hm2/hm2_5i25.0: IO Pin 013 (P3-10): Muxed Encoder #1, pin Muxed Index (Input)
[ 1699.289507] hm2/hm2_5i25.0: IO Pin 014 (P3-11): Muxed Encoder #2, pin Muxed A (Input)
[ 1699.289515] hm2/hm2_5i25.0: IO Pin 015 (P3-12): Muxed Encoder #2, pin Muxed B (Input)
[ 1699.289523] hm2/hm2_5i25.0: IO Pin 016 (P3-13): Muxed Encoder #2, pin Muxed Index (Input)
[ 1699.289531] hm2/hm2_5i25.0: IO Pin 017 (P2-01): StepGen #0, pin Direction (Output)
[ 1699.289539] hm2/hm2_5i25.0: IO Pin 018 (P2-14): StepGen #0, pin Step (Output)
[ 1699.289546] hm2/hm2_5i25.0: IO Pin 019 (P2-02): StepGen #1, pin Direction (Output)
[ 1699.289554] hm2/hm2_5i25.0: IO Pin 020 (P2-15): StepGen #1, pin Step (Output)
[ 1699.289561] hm2/hm2_5i25.0: IO Pin 021 (P2-03): StepGen #2, pin Direction (Output)
[ 1699.289569] hm2/hm2_5i25.0: IO Pin 022 (P2-16): StepGen #2, pin Step (Output)
[ 1699.289577] hm2/hm2_5i25.0: IO Pin 023 (P2-04): StepGen #3, pin Direction (Output)
[ 1699.289584] hm2/hm2_5i25.0: IO Pin 024 (P2-17): StepGen #3, pin Step (Output)
[ 1699.289592] hm2/hm2_5i25.0: IO Pin 025 (P2-05): StepGen #4, pin Direction (Output)
[ 1699.289599] hm2/hm2_5i25.0: IO Pin 026 (P2-06): StepGen #4, pin Step (Output)
[ 1699.289607] hm2/hm2_5i25.0: IO Pin 027 (P2-07): Smart Serial Interface #0, pin TxData3 (Output)
[ 1699.289615] hm2/hm2_5i25.0: IO Pin 028 (P2-08): Smart Serial Interface #0, pin RxData3 (Input)
[ 1699.289622] hm2/hm2_5i25.0: IO Pin 029 (P2-09): IOPort
[ 1699.289629] hm2/hm2_5i25.0: IO Pin 030 (P2-10): IOPort
[ 1699.289635] hm2/hm2_5i25.0: IO Pin 031 (P2-11): IOPort
[ 1699.289641] hm2/hm2_5i25.0: IO Pin 032 (P2-12): IOPort
[ 1699.289647] hm2/hm2_5i25.0: IO Pin 033 (P2-13): IOPort
[ 1699.290113] hm2/hm2_5i25.0: registered
[ 1699.290120] hm2_5i25.0: initialized AnyIO board at 0000:01:00.0
[ 1699.305286] creating ladder-state
[ 1699.994996] hm2_5i25.0: dropping AnyIO board at 0000:01:00.0
[ 1699.995009] hm2/hm2_5i25.0: unregistered
[ 1699.995659] hm2_pci: driver unloaded
[ 1700.000444] hm2: unloading
[ 1702.264453] RTAI[math]: unloaded.
[ 1702.269270] SCHED releases registered named ALIEN PEDV$D
[ 1702.283899] RTAI[malloc]: unloaded.
[ 1702.380045] RTAI[sched]: unloaded (forced hard/soft/hard transitions: traps 0, syscalls 0).
[ 1702.383958] I-pipe: head domain RTAI unregistered.
[ 1702.384404] RTAI[hal]: unmounted.
[ 1742.747165] I-pipe: head domain RTAI registered.
[ 1742.747180] RTAI[hal]: compiled with gcc version 4.7.2 (Debian 4.7.2-5) .
[ 1742.747276] RTAI[hal]: mounted (IPIPE-NOTHREADS, IMMEDIATE (INTERNAL IRQs DISPATCHED), ISOL_CPUS_MASK: 0).
[ 1742.747285] SYSINFO: CPUs 2, LINUX APIC IRQ 2312, TIM_FREQ 12465440, CLK_FREQ 1795052000, CPU_FREQ 1795052000
[ 1742.747293] RTAI_APIC_TIMER_IPI: RTAI DEFINED 2314, VECTOR 2314; LINUX_APIC_TIMER_IPI: RTAI DEFINED 2312, VECTOR 2312
[ 1742.747301] TIMER NAME: lapic; VARIOUSLY FOUND APIC FREQs: 12465440, 12465440, 12358000
[ 1742.769211] RTAI[malloc]: global heap size = 2097152 bytes, <BSD>.
[ 1742.769296] , <uses LINUX SYSCALLs>, kstacks pool size = 524288 bytes.
[ 1742.769308] RTAI[sched]: hard timer type/freq = APIC/12465440(Hz); default timing: oneshot; linear timed lists.
[ 1742.769317] RTAI[sched]: Linux timer freq = 250 (Hz), TimeBase freq = 1795052000 hz.
[ 1742.769323] RTAI[sched]: timer setup = 999 ns, resched latency = 2943 ns.
[ 1742.790936] RTAI[math]: loaded.
[ 1743.007067] hm2: loading Mesa HostMot2 driver version 0.15
[ 1743.012160] hm2_pci: loading Mesa AnyIO HostMot2 driver version 0.7
[ 1743.012223] hm2_pci: discovered 5i25 at 0000:01:00.0
[ 1743.015730] hm2/hm2_5i25.0: Smart Serial Firmware Version 43
[ 1743.072881] Board hm2_5i25.0.7i77.0.0 Hardware Mode 0 = standard
[ 1743.075609] Board hm2_5i25.0.7i77.0.0 Software Mode 0 = input_output
[ 1743.078285] Board hm2_5i25.0.7i77.0.0 Software Mode 1 = io_analog
[ 1743.082589] Board hm2_5i25.0.7i77.0.0 Software Mode 2 = io_analog_fieldvoltage
[ 1743.088070] Board hm2_5i25.0.7i77.0.0 Software Mode 3 = io_encoder_analog_fieldvoltage
[ 1743.184337] Board hm2_5i25.0.7i77.0.1 Hardware Mode 0 = standard
[ 1743.187124] Board hm2_5i25.0.7i77.0.1 Software Mode 0 = analogout_enables
[ 1743.269407] Board hm2_5i25.0.7i76.0.3 Hardware Mode 0 = standard
[ 1743.271416] Board hm2_5i25.0.7i76.0.3 Software Mode 0 = io_spin
[ 1743.274163] Board hm2_5i25.0.7i76.0.3 Software Mode 1 = io_ana_spin
[ 1743.277955] Board hm2_5i25.0.7i76.0.3 Software Mode 2 = io_enc_ana_spin_fv
[ 1743.359553] hm2/hm2_5i25.0: Warning: sserial remote device 7i76 channel 3 has old firmware that should be updated
[ 1743.435685] hm2/hm2_5i25.0: 34 I/O Pins used:
[ 1743.435694] hm2/hm2_5i25.0: IO Pin 000 (P3-01): IOPort
[ 1743.435701] hm2/hm2_5i25.0: IO Pin 001 (P3-14): IOPort
[ 1743.435707] hm2/hm2_5i25.0: IO Pin 002 (P3-02): IOPort
[ 1743.435716] hm2/hm2_5i25.0: IO Pin 003 (P3-15): Smart Serial Interface #0, pin TxData1 (Output)
[ 1743.435724] hm2/hm2_5i25.0: IO Pin 004 (P3-03): Smart Serial Interface #0, pin RxData1 (Input)
[ 1743.435732] hm2/hm2_5i25.0: IO Pin 005 (P3-16): Smart Serial Interface #0, pin TxData0 (Output)
[ 1743.435740] hm2/hm2_5i25.0: IO Pin 006 (P3-04): Smart Serial Interface #0, pin RxData0 (Input)
[ 1743.435749] hm2/hm2_5i25.0: IO Pin 007 (P3-17): Muxed Encoder Select #0, pin Mux Select 0 (Output)
[ 1743.435757] hm2/hm2_5i25.0: IO Pin 008 (P3-05): Muxed Encoder #0, pin Muxed A (Input)
[ 1743.435764] hm2/hm2_5i25.0: IO Pin 009 (P3-06): Muxed Encoder #0, pin Muxed B (Input)
[ 1743.435772] hm2/hm2_5i25.0: IO Pin 010 (P3-07): Muxed Encoder #0, pin Muxed Index (Input)
[ 1743.435780] hm2/hm2_5i25.0: IO Pin 011 (P3-08): Muxed Encoder #1, pin Muxed A (Input)
[ 1743.435788] hm2/hm2_5i25.0: IO Pin 012 (P3-09): Muxed Encoder #1, pin Muxed B (Input)
[ 1743.435796] hm2/hm2_5i25.0: IO Pin 013 (P3-10): Muxed Encoder #1, pin Muxed Index (Input)
[ 1743.435804] hm2/hm2_5i25.0: IO Pin 014 (P3-11): Muxed Encoder #2, pin Muxed A (Input)
[ 1743.435811] hm2/hm2_5i25.0: IO Pin 015 (P3-12): Muxed Encoder #2, pin Muxed B (Input)
[ 1743.435819] hm2/hm2_5i25.0: IO Pin 016 (P3-13): Muxed Encoder #2, pin Muxed Index (Input)
[ 1743.435827] hm2/hm2_5i25.0: IO Pin 017 (P2-01): StepGen #0, pin Direction (Output)
[ 1743.435835] hm2/hm2_5i25.0: IO Pin 018 (P2-14): StepGen #0, pin Step (Output)
[ 1743.435843] hm2/hm2_5i25.0: IO Pin 019 (P2-02): StepGen #1, pin Direction (Output)
[ 1743.435850] hm2/hm2_5i25.0: IO Pin 020 (P2-15): StepGen #1, pin Step (Output)
[ 1743.435858] hm2/hm2_5i25.0: IO Pin 021 (P2-03): StepGen #2, pin Direction (Output)
[ 1743.435865] hm2/hm2_5i25.0: IO Pin 022 (P2-16): StepGen #2, pin Step (Output)
[ 1743.435873] hm2/hm2_5i25.0: IO Pin 023 (P2-04): StepGen #3, pin Direction (Output)
[ 1743.435881] hm2/hm2_5i25.0: IO Pin 024 (P2-17): StepGen #3, pin Step (Output)
[ 1743.435888] hm2/hm2_5i25.0: IO Pin 025 (P2-05): StepGen #4, pin Direction (Output)
[ 1743.435896] hm2/hm2_5i25.0: IO Pin 026 (P2-06): StepGen #4, pin Step (Output)
[ 1743.435903] hm2/hm2_5i25.0: IO Pin 027 (P2-07): Smart Serial Interface #0, pin TxData3 (Output)
[ 1743.435912] hm2/hm2_5i25.0: IO Pin 028 (P2-08): Smart Serial Interface #0, pin RxData3 (Input)
[ 1743.435919] hm2/hm2_5i25.0: IO Pin 029 (P2-09): IOPort
[ 1743.435925] hm2/hm2_5i25.0: IO Pin 030 (P2-10): IOPort
[ 1743.435931] hm2/hm2_5i25.0: IO Pin 031 (P2-11): IOPort
[ 1743.435937] hm2/hm2_5i25.0: IO Pin 032 (P2-12): IOPort
[ 1743.435944] hm2/hm2_5i25.0: IO Pin 033 (P2-13): IOPort
[ 1743.436409] hm2/hm2_5i25.0: registered
[ 1743.436416] hm2_5i25.0: initialized AnyIO board at 0000:01:00.0
[ 1743.451724] creating ladder-state
[ 1876.440131] hm2_5i25.0: dropping AnyIO board at 0000:01:00.0
[ 1876.440144] hm2/hm2_5i25.0: unregistered
[ 1876.448513] hm2_pci: driver unloaded
[ 1876.453186] hm2: unloading
[ 1878.733911] RTAI[math]: unloaded.
[ 1878.738717] SCHED releases registered named ALIEN PEDV$D
[ 1878.753397] RTAI[malloc]: unloaded.
[ 1878.852042] RTAI[sched]: unloaded (forced hard/soft/hard transitions: traps 0, syscalls 0).
[ 1878.857929] I-pipe: head domain RTAI unregistered.
[ 1878.858040] RTAI[hal]: unmounted.
[ 1881.414714] I-pipe: head domain RTAI registered.
[ 1881.414729] RTAI[hal]: compiled with gcc version 4.7.2 (Debian 4.7.2-5) .
[ 1881.414830] RTAI[hal]: mounted (IPIPE-NOTHREADS, IMMEDIATE (INTERNAL IRQs DISPATCHED), ISOL_CPUS_MASK: 0).
[ 1881.414839] SYSINFO: CPUs 2, LINUX APIC IRQ 2312, TIM_FREQ 12465440, CLK_FREQ 1795052000, CPU_FREQ 1795052000
[ 1881.414847] RTAI_APIC_TIMER_IPI: RTAI DEFINED 2314, VECTOR 2314; LINUX_APIC_TIMER_IPI: RTAI DEFINED 2312, VECTOR 2312
[ 1881.414855] TIMER NAME: lapic; VARIOUSLY FOUND APIC FREQs: 12465440, 12465440, 12340500
[ 1881.429526] RTAI[malloc]: global heap size = 2097152 bytes, <BSD>.
[ 1881.429606] , <uses LINUX SYSCALLs>, kstacks pool size = 524288 bytes.
[ 1881.429618] RTAI[sched]: hard timer type/freq = APIC/12465440(Hz); default timing: oneshot; linear timed lists.
[ 1881.429627] RTAI[sched]: Linux timer freq = 250 (Hz), TimeBase freq = 1795052000 hz.
[ 1881.429633] RTAI[sched]: timer setup = 999 ns, resched latency = 2943 ns.
[ 1881.452379] RTAI[math]: loaded.
[ 1881.666519] hm2: loading Mesa HostMot2 driver version 0.15
[ 1881.671714] hm2_pci: loading Mesa AnyIO HostMot2 driver version 0.7
[ 1881.671778] hm2_pci: discovered 5i25 at 0000:01:00.0
[ 1881.675298] hm2/hm2_5i25.0: Smart Serial Firmware Version 43
[ 1881.732438] Board hm2_5i25.0.7i77.0.0 Hardware Mode 0 = standard
[ 1881.735321] Board hm2_5i25.0.7i77.0.0 Software Mode 0 = input_output
[ 1881.737974] Board hm2_5i25.0.7i77.0.0 Software Mode 1 = io_analog
[ 1881.742369] Board hm2_5i25.0.7i77.0.0 Software Mode 2 = io_analog_fieldvoltage
[ 1881.747849] Board hm2_5i25.0.7i77.0.0 Software Mode 3 = io_encoder_analog_fieldvoltage
[ 1881.843837] Board hm2_5i25.0.7i77.0.1 Hardware Mode 0 = standard
[ 1881.846585] Board hm2_5i25.0.7i77.0.1 Software Mode 0 = analogout_enables
[ 1881.929024] Board hm2_5i25.0.7i76.0.3 Hardware Mode 0 = standard
[ 1881.931135] Board hm2_5i25.0.7i76.0.3 Software Mode 0 = io_spin
[ 1881.934004] Board hm2_5i25.0.7i76.0.3 Software Mode 1 = io_ana_spin
[ 1881.937883] Board hm2_5i25.0.7i76.0.3 Software Mode 2 = io_enc_ana_spin_fv
[ 1882.019893] hm2/hm2_5i25.0: Warning: sserial remote device 7i76 channel 3 has old firmware that should be updated
[ 1882.096603] hm2/hm2_5i25.0: 34 I/O Pins used:
[ 1882.096612] hm2/hm2_5i25.0: IO Pin 000 (P3-01): IOPort
[ 1882.096619] hm2/hm2_5i25.0: IO Pin 001 (P3-14): IOPort
[ 1882.096625] hm2/hm2_5i25.0: IO Pin 002 (P3-02): IOPort
[ 1882.096633] hm2/hm2_5i25.0: IO Pin 003 (P3-15): Smart Serial Interface #0, pin TxData1 (Output)
[ 1882.096641] hm2/hm2_5i25.0: IO Pin 004 (P3-03): Smart Serial Interface #0, pin RxData1 (Input)
[ 1882.096650] hm2/hm2_5i25.0: IO Pin 005 (P3-16): Smart Serial Interface #0, pin TxData0 (Output)
[ 1882.096658] hm2/hm2_5i25.0: IO Pin 006 (P3-04): Smart Serial Interface #0, pin RxData0 (Input)
[ 1882.096666] hm2/hm2_5i25.0: IO Pin 007 (P3-17): Muxed Encoder Select #0, pin Mux Select 0 (Output)
[ 1882.096674] hm2/hm2_5i25.0: IO Pin 008 (P3-05): Muxed Encoder #0, pin Muxed A (Input)
[ 1882.096682] hm2/hm2_5i25.0: IO Pin 009 (P3-06): Muxed Encoder #0, pin Muxed B (Input)
[ 1882.096689] hm2/hm2_5i25.0: IO Pin 010 (P3-07): Muxed Encoder #0, pin Muxed Index (Input)
[ 1882.096697] hm2/hm2_5i25.0: IO Pin 011 (P3-08): Muxed Encoder #1, pin Muxed A (Input)
[ 1882.096705] hm2/hm2_5i25.0: IO Pin 012 (P3-09): Muxed Encoder #1, pin Muxed B (Input)
[ 1882.096713] hm2/hm2_5i25.0: IO Pin 013 (P3-10): Muxed Encoder #1, pin Muxed Index (Input)
[ 1882.096720] hm2/hm2_5i25.0: IO Pin 014 (P3-11): Muxed Encoder #2, pin Muxed A (Input)
[ 1882.096728] hm2/hm2_5i25.0: IO Pin 015 (P3-12): Muxed Encoder #2, pin Muxed B (Input)
[ 1882.096736] hm2/hm2_5i25.0: IO Pin 016 (P3-13): Muxed Encoder #2, pin Muxed Index (Input)
[ 1882.096744] hm2/hm2_5i25.0: IO Pin 017 (P2-01): StepGen #0, pin Direction (Output)
[ 1882.096751] hm2/hm2_5i25.0: IO Pin 018 (P2-14): StepGen #0, pin Step (Output)
[ 1882.096759] hm2/hm2_5i25.0: IO Pin 019 (P2-02): StepGen #1, pin Direction (Output)
[ 1882.096767] hm2/hm2_5i25.0: IO Pin 020 (P2-15): StepGen #1, pin Step (Output)
[ 1882.096774] hm2/hm2_5i25.0: IO Pin 021 (P2-03): StepGen #2, pin Direction (Output)
[ 1882.096782] hm2/hm2_5i25.0: IO Pin 022 (P2-16): StepGen #2, pin Step (Output)
[ 1882.096789] hm2/hm2_5i25.0: IO Pin 023 (P2-04): StepGen #3, pin Direction (Output)
[ 1882.096797] hm2/hm2_5i25.0: IO Pin 024 (P2-17): StepGen #3, pin Step (Output)
[ 1882.096804] hm2/hm2_5i25.0: IO Pin 025 (P2-05): StepGen #4, pin Direction (Output)
[ 1882.096812] hm2/hm2_5i25.0: IO Pin 026 (P2-06): StepGen #4, pin Step (Output)
[ 1882.096819] hm2/hm2_5i25.0: IO Pin 027 (P2-07): Smart Serial Interface #0, pin TxData3 (Output)
[ 1882.096827] hm2/hm2_5i25.0: IO Pin 028 (P2-08): Smart Serial Interface #0, pin RxData3 (Input)
[ 1882.096835] hm2/hm2_5i25.0: IO Pin 029 (P2-09): IOPort
[ 1882.096841] hm2/hm2_5i25.0: IO Pin 030 (P2-10): IOPort
[ 1882.096847] hm2/hm2_5i25.0: IO Pin 031 (P2-11): IOPort
[ 1882.096853] hm2/hm2_5i25.0: IO Pin 032 (P2-12): IOPort
[ 1882.096859] hm2/hm2_5i25.0: IO Pin 033 (P2-13): IOPort
[ 1882.098704] hm2/hm2_5i25.0: registered
[ 1882.098713] hm2_5i25.0: initialized AnyIO board at 0000:01:00.0
[ 1882.112731] creating ladder-state
[ 1923.984273] hm2_5i25.0: dropping AnyIO board at 0000:01:00.0
[ 1923.984287] hm2/hm2_5i25.0: unregistered
[ 1923.992564] hm2_pci: driver unloaded
[ 1923.997202] hm2: unloading
[ 1926.256299] RTAI[math]: unloaded.
[ 1926.261069] SCHED releases registered named ALIEN PEDV$D
[ 1926.277358] RTAI[malloc]: unloaded.
[ 1926.376048] RTAI[sched]: unloaded (forced hard/soft/hard transitions: traps 0, syscalls 0).
[ 1926.379960] I-pipe: head domain RTAI unregistered.
[ 1926.380387] RTAI[hal]: unmounted.
[ 1947.266531] I-pipe: head domain RTAI registered.
[ 1947.266546] RTAI[hal]: compiled with gcc version 4.7.2 (Debian 4.7.2-5) .
[ 1947.266646] RTAI[hal]: mounted (IPIPE-NOTHREADS, IMMEDIATE (INTERNAL IRQs DISPATCHED), ISOL_CPUS_MASK: 0).
[ 1947.266655] SYSINFO: CPUs 2, LINUX APIC IRQ 2312, TIM_FREQ 12465440, CLK_FREQ 1795052000, CPU_FREQ 1795052000
[ 1947.266663] RTAI_APIC_TIMER_IPI: RTAI DEFINED 2314, VECTOR 2314; LINUX_APIC_TIMER_IPI: RTAI DEFINED 2312, VECTOR 2312
[ 1947.266671] TIMER NAME: lapic; VARIOUSLY FOUND APIC FREQs: 12465440, 12465440, 12336500
[ 1947.281346] RTAI[malloc]: global heap size = 2097152 bytes, <BSD>.
[ 1947.281432] , <uses LINUX SYSCALLs>, kstacks pool size = 524288 bytes.
[ 1947.281444] RTAI[sched]: hard timer type/freq = APIC/12465440(Hz); default timing: oneshot; linear timed lists.
[ 1947.281453] RTAI[sched]: Linux timer freq = 250 (Hz), TimeBase freq = 1795052000 hz.
[ 1947.281459] RTAI[sched]: timer setup = 999 ns, resched latency = 2943 ns.
[ 1947.304057] RTAI[math]: loaded.
[ 1947.520760] hm2: loading Mesa HostMot2 driver version 0.15
[ 1947.525788] hm2_pci: loading Mesa AnyIO HostMot2 driver version 0.7
[ 1947.525850] hm2_pci: discovered 5i25 at 0000:01:00.0
[ 1947.529405] hm2/hm2_5i25.0: Smart Serial Firmware Version 43
[ 1947.586523] Board hm2_5i25.0.7i77.0.0 Hardware Mode 0 = standard
[ 1947.589494] Board hm2_5i25.0.7i77.0.0 Software Mode 0 = input_output
[ 1947.591962] Board hm2_5i25.0.7i77.0.0 Software Mode 1 = io_analog
[ 1947.596289] Board hm2_5i25.0.7i77.0.0 Software Mode 2 = io_analog_fieldvoltage
[ 1947.601720] Board hm2_5i25.0.7i77.0.0 Software Mode 3 = io_encoder_analog_fieldvoltage
[ 1947.698004] Board hm2_5i25.0.7i77.0.1 Hardware Mode 0 = standard
[ 1947.700766] Board hm2_5i25.0.7i77.0.1 Software Mode 0 = analogout_enables
[ 1947.783023] Board hm2_5i25.0.7i76.0.3 Hardware Mode 0 = standard
[ 1947.785363] Board hm2_5i25.0.7i76.0.3 Software Mode 0 = io_spin
[ 1947.787987] Board hm2_5i25.0.7i76.0.3 Software Mode 1 = io_ana_spin
[ 1947.791842] Board hm2_5i25.0.7i76.0.3 Software Mode 2 = io_enc_ana_spin_fv
[ 1947.873878] hm2/hm2_5i25.0: Warning: sserial remote device 7i76 channel 3 has old firmware that should be updated
[ 1947.949974] hm2/hm2_5i25.0: 34 I/O Pins used:
[ 1947.949984] hm2/hm2_5i25.0: IO Pin 000 (P3-01): IOPort
[ 1947.949991] hm2/hm2_5i25.0: IO Pin 001 (P3-14): IOPort
[ 1947.949997] hm2/hm2_5i25.0: IO Pin 002 (P3-02): IOPort
[ 1947.950005] hm2/hm2_5i25.0: IO Pin 003 (P3-15): Smart Serial Interface #0, pin TxData1 (Output)
[ 1947.950014] hm2/hm2_5i25.0: IO Pin 004 (P3-03): Smart Serial Interface #0, pin RxData1 (Input)
[ 1947.950022] hm2/hm2_5i25.0: IO Pin 005 (P3-16): Smart Serial Interface #0, pin TxData0 (Output)
[ 1947.950030] hm2/hm2_5i25.0: IO Pin 006 (P3-04): Smart Serial Interface #0, pin RxData0 (Input)
[ 1947.950038] hm2/hm2_5i25.0: IO Pin 007 (P3-17): Muxed Encoder Select #0, pin Mux Select 0 (Output)
[ 1947.950046] hm2/hm2_5i25.0: IO Pin 008 (P3-05): Muxed Encoder #0, pin Muxed A (Input)
[ 1947.950054] hm2/hm2_5i25.0: IO Pin 009 (P3-06): Muxed Encoder #0, pin Muxed B (Input)
[ 1947.950062] hm2/hm2_5i25.0: IO Pin 010 (P3-07): Muxed Encoder #0, pin Muxed Index (Input)
[ 1947.950070] hm2/hm2_5i25.0: IO Pin 011 (P3-08): Muxed Encoder #1, pin Muxed A (Input)
[ 1947.950077] hm2/hm2_5i25.0: IO Pin 012 (P3-09): Muxed Encoder #1, pin Muxed B (Input)
[ 1947.950085] hm2/hm2_5i25.0: IO Pin 013 (P3-10): Muxed Encoder #1, pin Muxed Index (Input)
[ 1947.950093] hm2/hm2_5i25.0: IO Pin 014 (P3-11): Muxed Encoder #2, pin Muxed A (Input)
[ 1947.950101] hm2/hm2_5i25.0: IO Pin 015 (P3-12): Muxed Encoder #2, pin Muxed B (Input)
[ 1947.950109] hm2/hm2_5i25.0: IO Pin 016 (P3-13): Muxed Encoder #2, pin Muxed Index (Input)
[ 1947.950117] hm2/hm2_5i25.0: IO Pin 017 (P2-01): StepGen #0, pin Direction (Output)
[ 1947.950124] hm2/hm2_5i25.0: IO Pin 018 (P2-14): StepGen #0, pin Step (Output)
[ 1947.950132] hm2/hm2_5i25.0: IO Pin 019 (P2-02): StepGen #1, pin Direction (Output)
[ 1947.950140] hm2/hm2_5i25.0: IO Pin 020 (P2-15): StepGen #1, pin Step (Output)
[ 1947.950147] hm2/hm2_5i25.0: IO Pin 021 (P2-03): StepGen #2, pin Direction (Output)
[ 1947.950155] hm2/hm2_5i25.0: IO Pin 022 (P2-16): StepGen #2, pin Step (Output)
[ 1947.950162] hm2/hm2_5i25.0: IO Pin 023 (P2-04): StepGen #3, pin Direction (Output)
[ 1947.950170] hm2/hm2_5i25.0: IO Pin 024 (P2-17): StepGen #3, pin Step (Output)
[ 1947.950178] hm2/hm2_5i25.0: IO Pin 025 (P2-05): StepGen #4, pin Direction (Output)
[ 1947.950185] hm2/hm2_5i25.0: IO Pin 026 (P2-06): StepGen #4, pin Step (Output)
[ 1947.950195] hm2/hm2_5i25.0: IO Pin 027 (P2-07): Smart Serial Interface #0, pin TxData3 (Output)
[ 1947.950203] hm2/hm2_5i25.0: IO Pin 028 (P2-08): Smart Serial Interface #0, pin RxData3 (Input)
[ 1947.950210] hm2/hm2_5i25.0: IO Pin 029 (P2-09): IOPort
[ 1947.950216] hm2/hm2_5i25.0: IO Pin 030 (P2-10): IOPort
[ 1947.950223] hm2/hm2_5i25.0: IO Pin 031 (P2-11): IOPort
[ 1947.950229] hm2/hm2_5i25.0: IO Pin 032 (P2-12): IOPort
[ 1947.950235] hm2/hm2_5i25.0: IO Pin 033 (P2-13): IOPort
[ 1947.950701] hm2/hm2_5i25.0: registered
[ 1947.950707] hm2_5i25.0: initialized AnyIO board at 0000:01:00.0
[ 1947.965854] creating ladder-state
[ 2310.617973] hm2_5i25.0: dropping AnyIO board at 0000:01:00.0
[ 2310.617987] hm2/hm2_5i25.0: unregistered
[ 2310.618615] hm2_pci: driver unloaded
[ 2310.623399] hm2: unloading
[ 2312.872800] RTAI[math]: unloaded.
[ 2312.877627] SCHED releases registered named ALIEN PEDV$D
[ 2312.893460] RTAI[malloc]: unloaded.
[ 2312.992045] RTAI[sched]: unloaded (forced hard/soft/hard transitions: traps 0, syscalls 0).
[ 2312.995974] I-pipe: head domain RTAI unregistered.
[ 2312.996416] RTAI[hal]: unmounted.
[ 2316.872872] usb 1-6: USB disconnect, device number 4
[ 2316.873047] rndis_host 1-6:1.0: usb0: unregister 'rndis_host' usb-0000:00:1d.7-6, RNDIS device
[ 5294.806159] I-pipe: head domain RTAI registered.
[ 5294.806174] RTAI[hal]: compiled with gcc version 4.7.2 (Debian 4.7.2-5) .
[ 5294.806272] RTAI[hal]: mounted (IPIPE-NOTHREADS, IMMEDIATE (INTERNAL IRQs DISPATCHED), ISOL_CPUS_MASK: 0).
[ 5294.806280] SYSINFO: CPUs 2, LINUX APIC IRQ 2312, TIM_FREQ 12465440, CLK_FREQ 1795052000, CPU_FREQ 1795052000
[ 5294.806288] RTAI_APIC_TIMER_IPI: RTAI DEFINED 2314, VECTOR 2314; LINUX_APIC_TIMER_IPI: RTAI DEFINED 2312, VECTOR 2312
[ 5294.806296] TIMER NAME: lapic; VARIOUSLY FOUND APIC FREQs: 12465440, 12465440, 12339750
[ 5294.821351] RTAI[malloc]: global heap size = 2097152 bytes, <BSD>.
[ 5294.821433] , <uses LINUX SYSCALLs>, kstacks pool size = 524288 bytes.
[ 5294.821445] RTAI[sched]: hard timer type/freq = APIC/12465440(Hz); default timing: oneshot; linear timed lists.
[ 5294.821453] RTAI[sched]: Linux timer freq = 250 (Hz), TimeBase freq = 1795052000 hz.
[ 5294.821460] RTAI[sched]: timer setup = 999 ns, resched latency = 2943 ns.
[ 5294.844843] RTAI[math]: loaded.
[ 5295.042992] GANTRYKINS: joints[0] = 0
[ 5295.043002] GANTRYKINS: joints[1] = 1
[ 5295.043009] GANTRYKINS: joints[2] = 1
[ 5295.043015] GANTRYKINS: joints[3] = 2
[ 5295.043021] GANTRYKINS: joints[4] = 8
[ 5295.043028] GANTRYKINS: joints[5] = -1
[ 5295.043035] GANTRYKINS: joints[6] = -1
[ 5295.043042] GANTRYKINS: joints[7] = -1
[ 5295.043049] GANTRYKINS: joints[8] = -1
[ 5295.071176] hm2: loading Mesa HostMot2 driver version 0.15
[ 5295.076207] hm2_pci: loading Mesa AnyIO HostMot2 driver version 0.7
[ 5295.076271] hm2_pci: discovered 5i25 at 0000:01:00.0
[ 5295.079700] hm2/hm2_5i25.0: Smart Serial Firmware Version 43
[ 5295.136771] Board hm2_5i25.0.7i77.0.0 Hardware Mode 0 = standard
[ 5295.139547] Board hm2_5i25.0.7i77.0.0 Software Mode 0 = input_output
[ 5295.142190] Board hm2_5i25.0.7i77.0.0 Software Mode 1 = io_analog
[ 5295.146515] Board hm2_5i25.0.7i77.0.0 Software Mode 2 = io_analog_fieldvoltage
[ 5295.151990] Board hm2_5i25.0.7i77.0.0 Software Mode 3 = io_encoder_analog_fieldvoltage
[ 5295.248331] Board hm2_5i25.0.7i77.0.1 Hardware Mode 0 = standard
[ 5295.251118] Board hm2_5i25.0.7i77.0.1 Software Mode 0 = analogout_enables
[ 5295.334819] Board hm2_5i25.0.7i76.0.3 Hardware Mode 0 = standard
[ 5295.337145] Board hm2_5i25.0.7i76.0.3 Software Mode 0 = io_spin
[ 5295.340020] Board hm2_5i25.0.7i76.0.3 Software Mode 1 = io_ana_spin
[ 5295.343823] Board hm2_5i25.0.7i76.0.3 Software Mode 2 = io_enc_ana_spin_fv
[ 5295.426200] hm2/hm2_5i25.0: Warning: sserial remote device 7i76 channel 3 has old firmware that should be updated
[ 5295.483686] hm2/hm2_5i25.0: 34 I/O Pins used:
[ 5295.483695] hm2/hm2_5i25.0: IO Pin 000 (P3-01): IOPort
[ 5295.483702] hm2/hm2_5i25.0: IO Pin 001 (P3-14): IOPort
[ 5295.483708] hm2/hm2_5i25.0: IO Pin 002 (P3-02): IOPort
[ 5295.483716] hm2/hm2_5i25.0: IO Pin 003 (P3-15): Smart Serial Interface #0, pin TxData1 (Output)
[ 5295.483724] hm2/hm2_5i25.0: IO Pin 004 (P3-03): Smart Serial Interface #0, pin RxData1 (Input)
[ 5295.483732] hm2/hm2_5i25.0: IO Pin 005 (P3-16): Smart Serial Interface #0, pin TxData0 (Output)
[ 5295.483740] hm2/hm2_5i25.0: IO Pin 006 (P3-04): Smart Serial Interface #0, pin RxData0 (Input)
[ 5295.483749] hm2/hm2_5i25.0: IO Pin 007 (P3-17): Muxed Encoder Select #0, pin Mux Select 0 (Output)
[ 5295.483757] hm2/hm2_5i25.0: IO Pin 008 (P3-05): Muxed Encoder #0, pin Muxed A (Input)
[ 5295.483765] hm2/hm2_5i25.0: IO Pin 009 (P3-06): Muxed Encoder #0, pin Muxed B (Input)
[ 5295.483772] hm2/hm2_5i25.0: IO Pin 010 (P3-07): Muxed Encoder #0, pin Muxed Index (Input)
[ 5295.483780] hm2/hm2_5i25.0: IO Pin 011 (P3-08): Muxed Encoder #1, pin

I think "Axes = 5" is the problem.

To use a W axis you need a full 9 axes.

You need to check what the "loadrt motmod" line in the HAL file is using for num_axes. This normally comes from the INI, but it doesn't have to.

If you have [TRAJ] COORDINATES = XYZW then you won't see (and can't reference in G-code) the missing axes.

Sorry the code tags don't seem to be working for that post. I did start off with this branch of JA: github.com/curtdutt/linuxcnc but I was having issues getting that to work too. I was having the problem described in this thread: forum.linuxcnc.org/forum/49-basic-config...try-machine?start=10 and also some peculiar jog speeds etc. I was planning to have another go at gentrivkins if I could gantrykins working.

loadrt motmod is using what is written in the ini. When AXES=9 I get the problems stated in the first post

COORDINATES = X Y Z w

Perhaps it is case-sensitive?