Mac/Steve,
The only difference between the 5K and 7.5K spindle is the gear ratio inside the spindle head, all tuning parameters are the same.
Running the spindle in velocity mode, the control loop is contained in the spindle drive. Just supply speed command to the drive and wait for spindle at speed return from the drive.
In torque mode, the control loop is through the nextmove card as the spindle drive outputs the encoders and the tuning parameters for that loop are contained in the .ini file.
The ATC is fairly simple. Home it. Loosen the nut under the platter and set it up for perfect alignment in position 1, and then there is a table that is just + and - encoder counts from ideal position to actual position. Do you have a schematic of the board? It is a serial link and there are a number of built-in commands that you can access from I believe it is <shift> H, maybe <ctrl> H.
Let me know if I can help.
Don