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Thank you for your responses.
I see now how to call another subrutine. If I'm in a running subroutine and stop it, do I have to end it (END SUB) before I call the new subrutine?

I meant "work offset".

If I am undestanding this L20 P0 would change the axis for all subroutines relative to the machine coordinates and not change the WCS offsets for each location i.e. G54...5,6,7. Is this the same as using the Axis Screen offset for P0?

Essintially the program ran the first opertion to all 4 locaions then lifted up and stopped. I want to be able to move it back to the first location and change the tool and set the Z work offset for the nest operation.

Many thanks

Raw counts will be set to 0 when LinuxCNC starts so its still
just a relative count number.

What is the spacing between index marks on your scale?

You have

setp hm2_[MESA](BOARD).0.encoder.00.filter 0

(on all axis) You might try:

setp hm2_[MESA](BOARD).0.encoder.00.filter 1

In case it's a noise issue.

Yeah, sorry, I copied them from a 7I96S halshow and forgot to delete the "s"

Thank you very much, I will try those fixes and get back to you.

I also wanted to mention that when we manufacture this machine with new pc hardware and this new software we get the latency warnings but the machine performs without issues. I don't know if that is relevant or not.