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OK the drive does all 3 types and so does LinuxCNC with Mesa.
Drive modes from your pictures are:
0 = up/down step pulses
1 = step/dir
2 = quadrature
-
LinuxCNC modes:
0 = step/dir
1 = up/down
2 = quadrature

linuxcnc.org/docs/html/man/man9/stepgen.9.html

No idea really, but you can always try the "lcec_configgen" command to see what lcec's guess of a config can look like.
EL5102 is available as a lcec device if you want to look at how it is done for that one. I is a similar encoder I think.

Found something.
Left to figure out how to set it correctly. It looks like the step dir is also supported in this drive.
 
 

If you mean CV and CCV quadrature steps, then most probably yes, and the only thing required should be to change the stepgen type in hal to type 1 or 2 (i forgot what exactly).

Hello!
Can the 7i96s card handle CW +/- and CCW +/- instead of step/dir?
I need to control a Mitsubishi mr-je-40a servo drive I
The drive smarter then me, so, I'm not sure... Maybe the servo can the step/dir too, but not figured it out yet how.

???