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in the lower left corner you has the 2 check boxes ... check both and do the restart solution and activate solution ... 

everything should be written in the local memory ... but maybe you will probably need the initCmds file 

do not forget to activate DC .. because it is not active from default .. just SM synchro

if you are lazy, just use the console   to generate right configuration ... double click on the .exe ... then "c -i" enter .. then drag and drop your full master config export... 

hes talking about some of the options in view menu are persistent across reboots and save settings with .axis_preference , but some options , like " Hide PYVCP" are not persistent, and pyvcp needs to be hidden every boot.

The inches/mm one should be something in ini file thought. there are default configs that load with inches, and some mm.