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This is often due to the stepper driver "enable" pins being wired, but not properly conttrolled.
The stepconf wizard doesn't dribe the "enable" pins, and most stepper drivers have an enable that is "enabled" when unconnected.

I would generally suggest saving pins and not wiring the enables. There is no real need for an enable control on a stepper driver (they can't run away in a fault condition, unlike a servo)

Actually the 5I25 has connectors P2 and P3 which are logical ports 1 and 0 respectively.

The info on that Wiki page is possibly a bit confusing as it combines a HAL config that I used initially, with the GUI that I use with a more developed version.

The .ui file is a GladeVCP and would be loaded by a line in the INI like:

I also seem to have fogotten to mention the custom "hobbing" HAL component. This is installed from the attached file with the command "sudo halcompile --install hobbing.comp"

This is then loaded in the main HAL file with:
(It looks like I need to re-write that Wiki page)