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In your ini file you have references calling those two files, and those two files are not in your config folder.
If there is nothing you added to those files, edit the ini and omit those two entries calling those files, save, try again.

Found the issue!

Checked all encoder connections, everythings fine. Removed the encoder cover and found small aluminum chips, removed them carfully and sealed it of better. Still the same issue.

The problem turned out to be the powersupply I suspect the thing was overheating after a while and shut off so the motor skipped some steps.

I will add cooling fans with fin filters to keep aluminum chips out. Thanks for the help I am happy to have cleared the chips from my encoder.