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Hallo ich habe den Test an 2 Verschiedenen Mesa ausgeführt

My first guess, with a quick lock over your files, is that you mentioned directly in the beginning that its an non CIA402 conform drive.
So my first question is why did you use CIA402 in your hal?
Maybe you should connect each PDO which you need from your XML with the correct hal pin over lcec so that you always connect with the right pdos. With the CIA402 you cannot really say...

For your info i bought the ES580 with a Lusintun Spindle and i will go nearly the same path with the Ethercat board, so maybe we will find a solution together...

Can I use this project for 4 analog pot inputs rapid feed spindle and jog speed?
Arguino pro mini will work ? 
How I will connect with PC with ttl2USB adapter or it is better to use leonardo that has USB interface?
What about esp32 will work with this?

It's the Realtek hardware, nothing wrong with ethernet chip used by Mesa.

I updated the ethernet driver and t seems to be ok now. It appears its an issue with mesa ethernet boards and realtek hardware which is how i found out about it. seems its an issue with EtherCAT as well.

I'm setting up my tool height setter and am having a similar issue.  It is not happening every time, but I'd say around 50% of the time i run the command.  I am running 2.9.4, gmoccapy and on an intel N100 PC and have no other latency issues.
Full error line is: emc/task/emctask.cc 68: interp_error: Queue is not empty after probing.  The other odd thing is when I don't get the error, #5063 will have a good value in it, but #5070 never gets set to 1

Gcode for the probe sub:
o<tool_probe> sub
O100 if [#<_task> EQ 0]
O100     return
O100 endif
G17 G20 G49 G90
G0 G53 X35.52 Y13.415
G0 G53 Z-7.0
G91
G38.3 Z-4 F10
(DEBUG, Z#5063)
G90 G53 Z-4.0
o<tool_probe> endsub