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self._jointNum = INFO.GET_JOINT_NUM_FROM_AXIS_INDEX.get(self.joint_number)

<QTvcp QTVCP QT_MAKEPINS><VERBOSE>  HAL-ified widget: dro_axis_4 (logger py:38)
<QTvcp QTVCP WIDGETS WIDGET_BASECLASS><VERBOSE>  HAL_init: ObjectName:'dro_axis_4'
    SELF:<qtvcp widgets dro_widget DROLabel object at 0x7fe5f22b7490>
    HAL NAME:dro_axis_4
    PREFS:<qtvcp lib preferences Access object at 0x7fe6289fab90>
    INSTANMCE:<qtvcp qt_makegui VCPWindow object at 0x7fe62abc0790> (logger py:38)
<QTvcp QTVCP WIDGETS DRO_WIDGET><DEBUG>  axis number 4 not found in available-axis to joint conversion dict {0: 0, 1: 2, 2: 3, 8: 4} of widget: dro_axis_4 (dro_widget py:75)
<QTvcp QTVCP QT_MAKEPINS><VERBOSE>  HAL-ified widget: dro_axis_3 (logger py:38)
<QTvcp QTVCP WIDGETS WIDGET_BASECLASS><VERBOSE>  HAL_init: ObjectName:'dro_axis_3'
    SELF:<qtvcp widgets dro_widget DROLabel object at 0x7fe5f22b7520>
    HAL NAME:dro_axis_3
    PREFS:<qtvcp lib preferences Access object at 0x7fe6289fab90>
    INSTANMCE:<qtvcp qt_makegui VCPWindow object at 0x7fe62abc0790> (logger py:38)
<QTvcp QTVCP WIDGETS DRO_WIDGET><DEBUG>  axis number 3 not found in available-axis to joint conversion dict {0: 0, 1: 2, 2: 3, 8: 4} of widget: dro_axis_3 (dro_widget py:75)
<QTvcp QTVCP QT_MAKEPINS><VERBOSE>  HAL-ified widget: offsettoolbutton_2 (logger py:38)
<QTvcp QTVCP WIDGETS WIDGET_BASECLASS><VERBOSE>  HAL_init: ObjectName:'offsettoolbutton_2'
    SELF:<qtvcp widgets offset_tool_button OffsetToolButton object at 0x7fe5f22b79a0>
    HAL NAME:offsettoolbutton_2
    PREFS:<qtvcp lib preferences Access object at 0x7fe6289fab90>
    INSTANMCE:<qtvcp qt_makegui VCPWindow object at 0x7fe62abc0790> (logger py:38)


I believe that the axis numbers are coming from the INI file which seems correct to me:

Here's what I have set:
<DISPLAY> 
GEOMETRY = xyzw 
<KINS> JOINTS = 5 
KINEMATICS = trivkins coordinates=XYYZW kinstype=BOTH 
<TRAJ> COORDINATES = X Y Y Z W 
<AXIS_X> 
<JOINT_0> 

<AXIS_Y> 
<JOINT_1> 
<JOINT_2> 

<AXIS_Z> 
<JOINT_3> 

<AXIS_W> 
<JOINT_4>  

def custom_pre_parse(data):
    if data[:3] == 'M07':
        return(f'G91  M3 $0 \nF#<_hal[plasmac.cut-feed-rate]>\n')

sudo xinit linuxcnc $* -- :0 vt$XDG_VTNR

> sudo xinit linuxcnc $* -- :0 vt$XDG_VTNR


X.Org X Server 1.21.1.7
X Protocol Version 11, Revision 0
Current Operating System: Linux cnc 6.6.31+rpt-rpi-v8 #1 SMP PREEMPT Debian 1:6.6.31-1+rpt1 (2024-05-29) aarch64
Kernel command line: coherent_pool=1M 8250.nr_uarts=0 snd_bcm2835.enable_headphones=0 snd_bcm2835.enable_headphones=1 snd_bcm2835.enable_hdmi=1 snd_bcm2835.enable_hdmi=0  vc_mem.mem_base=0x3ec00000 vc_mem.mem_size=0x40000000  console=ttyS0,115200 console=tty1 root=PARTUUID=6396eb0b-02 rootfstype=ext4 fsck.repair=yes rootwait cfg80211.ieee80211_regdom=GB
xorg-server 2:21.1.7-3+rpt2+deb12u7 (https://www.debian.org/support)
Current version of pixman: 0.42.2
        Before reporting problems, check http://wiki.x.org
        to make sure that you have the latest version.
Markers: (--) probed, (**) from config file, (==) default setting,
        (++) from command line, (!!) notice, (II) informational,
        (WW) warning, (EE) error, (NI) not implemented, (??) unknown.
(==) Log file: "/var/log/Xorg.0.log", Time: Mon Jul  8 21:42:58 2024
(==) Using config directory: "/etc/X11/xorg.conf.d"
(==) Using system config directory "/usr/share/X11/xorg.conf.d"
xinit: connection to X server lost

waiting for X server to shut down (II) Server terminated successfully (0). Closing log file.

sudo xinit ./test.sh $* -- :0 vt$XDG_VTNR