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Also the thing that sticks out is that the step-gen is also removed, as this is done on the weeny card, but cannot see anything that is needed to enable that (and the homing works ok)

I will post the working gmocappy that worked originally

That is sort of what I tried. Unfortunately the new configs can only be made for a parallel port or a Mesa card.

Since this is a raspberry pi the parallel port won't run. I do have another working CNC that is running a Mesa, but that is operational and in use at the moment.

What I attempted here was to use the sample config I had to get a working gmoccapy, which worked fine, including jogging.

I then ran the wizard with the par_port option and qtPlasmac as the front end to create a default plasmac config.

I then replaced the par_port and associated hal nets, mainly just the joints and limits with the ones from the working gmoccapy config.

Unsure if there is a better way to achieve this.