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What do you have selected to enable the spindle?

Typically you need one output for single direction spindles 
and two for reversible spindles.

On a 7I96S, in hal, these would normally connect to the isolated
outputs on TB3, which in turn need to be wired to appropriate
VFD control pins.

Discovery is an option in the board name menu:


 


Then:


 


Next setup the card name and communication details:


 


This shows the additional stepgens, encoders and PWMgens after discovery
Using 7i96s_5abob. bin firmware on the 7I96S: